Gene Information

Name : PSMK_30910 (PSMK_30910)
Accession : YP_005447147.1
Strain : Phycisphaera mikurensis NBRC 102666
Genome accession: NC_017080
Putative virulence/resistance : Virulence
Product : iron ABC transporter substrate binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3666418 - 3667365 bp
Length : 948 bp
Strand : +
Note : -

DNA sequence : 
ATGCCCCCACGCTCCCCCCTCCGCGGCCTCTTGTTCCCCACCCTCGCCCTGCTCGCGGCGGCGCTGATCACCGGCTGCGA
CGACACCGGCCCCGCCGCGACCGCGGGCGGCCGCGAGGACGGACGCACGCGGGTGGTGACCACCTTCACCATCCTCCAGG
ACATGGCGCAGAACGTCGCCGGCGAGGCGGCGGTCGTCGAGTCGATCACCAAGCCCGGCGCCGAGATCCACGAGTACCAG
CCGACCCCGCTGGACATCGTCAAGGCCCAGGACGCCGACCTGGTGATCCGCAACGGCATGGGGCTGGAGCGGTGGTTCGA
GAAGTTCATGGGCAGCGTCGCCGACGTCCCCAGCGTCGACCTCTCCGAGGGCGTGGAGCCGATGAGCATCGGCGGGGGGC
CGTACGACGGCAAGCCCAACCCGCACGCCTGGATGTCGCCGAGCAACGCCCTGATCTACGTCGAGAACATCCGCAAGGCG
CTCAGCGACGTCGACCCCGCGAACGCCGAGACCTACCGGACCAACGCCGAGGCCTACGCGGCGGAGATCCGGGCGATCGA
GGAGCCGACCCGCCAGAAGCTTGCGGAGATCCCCGCCGAGCGGCGCTGGCTGGTCTCCAGCGAGGGCGCCTTCAGCTACC
TCGCCCGCGACAACGGGATGAAGGAGCTGTTCCTCTGGCCGGTGAACGCGGACGCCGAGGGCACGCCGCAGCAGATCCGC
CGGGTGGTCGACACGATCCGCGCCAACGACATCCCCGTGGCCTTCAGCGAGAGCACGATCAGCGACAAGCCGATGCGGCA
GGTCGTCGCCGAATCCGGCTCCCGCTACGGCGGCGTGCTCTACGTCGACTCGCTGACCGACGCGGGCGGCGTGGCGCCGA
CCTACCTCCAGCTGCTGGCCTACAACGCGCGGACGATCGTCGACGGCTTCGAGGAAGGCTTGGAGTGA

Protein sequence : 
MPPRSPLRGLLFPTLALLAAALITGCDDTGPAATAGGREDGRTRVVTTFTILQDMAQNVAGEAAVVESITKPGAEIHEYQ
PTPLDIVKAQDADLVIRNGMGLERWFEKFMGSVADVPSVDLSEGVEPMSIGGGPYDGKPNPHAWMSPSNALIYVENIRKA
LSDVDPANAETYRTNAEAYAAEIRAIEEPTRQKLAEIPAERRWLVSSEGAFSYLARDNGMKELFLWPVNADAEGTPQQIR
RVVDTIRANDIPVAFSESTISDKPMRQVVAESGSRYGGVLYVDSLTDAGGVAPTYLQLLAYNARTIVDGFEEGLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-81 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-81 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-81 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 7e-82 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-81 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30910 YP_005447147.1 iron ABC transporter substrate binding protein BAC0439 Protein 2e-83 65
PSMK_30910 YP_005447147.1 iron ABC transporter substrate binding protein BAC0349 Protein 4e-82 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30910 YP_005447147.1 iron ABC transporter substrate binding protein VFG0525 Protein 4e-82 64