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Name : hsdM (PSMK_27900) Accession : YP_005446846.1 Strain : Phycisphaera mikurensis NBRC 102666 Genome accession: NC_017080 Putative virulence/resistance : Unknown Product : type I restriction-modification system modification subunit Function : - COG functional category : - COG ID : - EC number : 2.1.1.72 Position : 3324486 - 3326147 bp Length : 1662 bp Strand : + Note : protein synonym:type-I restriction enzyme M protein DNA sequence : ATGCCCGCGACCGAACACGCTTTCCTCCGCGAGCTCGACGCCAAGCTCTGGGCCGCCGCCGACAAGCTGCGGAACAACCT CGACGCCGCCCAGTACAAGCACGCCGTCCTGGGGCTGATCTTCCTGAAGTACGTCTCCGACGCCTTCGACGCCCGCCGCG AGCGGGTGCTCGCCGACCTGCGCGACCCGGACAGCGAGTCCTTCTACCCCGACGCCACCGAAGAGGACCTGCACGCCGAG CTGGAGGACAGAGACCACTACACCGCCGCGAACACCTTCTGGGTCCCCCCGCTGGCCCGCTGGCAGAACCTCCAGAGCTG GGCCAAGCTGCCGCCGCAGACGACCGTGGAGGTGAAGAATGGCAAGACGGAGAAGTACACGATCAAGAGCACCGCGCTGC TCATCGACGACGCCCTCGCCGCCGTCGAGCACGAGAACGAGCCGCTCAAGAACGTCCTCGCCCGCGACACCTACGCCCGC CTGCAGTTGGATCCCGCCAATCTGCGCGGCCTGATCGACCTGGTCGCCGGCATCCCCTTCACCCACGACCGCCTGCAGGC CCGGGACATCCTCGGCCACGTGTACGAGTACTTCCTGGGCCAGTTCGCCTTGGCGGAGGGCAAGAAGGGCGGCCAGTACT TCACGCCGAAGAGCATCGTCGGCCTCATCGTCGAGATGCTGCAGCCGTACTGGGGCCGCGTCTACGACCCGGCGATGGGC AGCGGCGGCTTCTTCGTCGAGATCGAGAAGCACGTGGAGCGGGCCTACGACGAACGCACCCACGGCGCTTCCGGGGGGAT CAGCGTCTACGGGCAGGAGAGCAACCCCACCACCTGGCGGCTGGCCGCGATGAACATGGCCATCCGCGGCATCGACTTCA ACTTCGGCAAGACGTGGGCGAACAGCTTCACGCAGGACCAGCACCCCGACCTGCGGGCCGACTTCGTGATGGCCAACCCG CCGTTCAACGTGAGCGACTGGTGGGACGCCAAGCTCGCCGACGACCCGCGCTGGACGCACGGCACGCCGCCCAAGGGCAA CGCGAACTTCGCCTGGGTGCAGCACATGCTCCACCACCTGGCCCCCACCGGCAGCATGGCCCTGCTGCTGGCCAACGGCA GCATGTCCGGCACGTCCGGCGGCGAGGGCGACATCCGCCGCGCCCTCGTCGAGGCCGACCTGGTCGAGTGCATGGTCGCC CTGCCCGGCCAGCTGTTTACCAACACGCAGATCCCCGCGTGCATCTGGTTCCTCACGAAGGACAAGGCGGCGCGGAACGG CAAACGCGACCGCCGCGGCGAGGTGCTCTTTCTCGACGCCCGCGGCGTCGGCTACATGAAGGACCGCGTGCTGCGCGACT TCACCCGTGAAGACATCCAGAAGCTCGCCGGCACCTTCCACGCCTGGCAAGGCTTGGGCGACGACGAGTACGCCGACATC CCCGGCTTCTGCAAGTCAGCGACGCTAGCCGAGATCGCCGCCCAGGGCTTCGTGCTGACTCCCGGCCGCTACGTCGGTGT CGCCGCGGCGGAGGACGACGGCGAGCCCTTCGCCGAGAAGATGGCCCGCCTGACGGCCGAGCTGAGCGGGCAGTTCGAGG AGTCCGCTGCGCTGGAGGCGAAGATCCGGCGGAACCTGGAGGGGGTGGGATATGAGGTCTGA Protein sequence : MPATEHAFLRELDAKLWAAADKLRNNLDAAQYKHAVLGLIFLKYVSDAFDARRERVLADLRDPDSESFYPDATEEDLHAE LEDRDHYTAANTFWVPPLARWQNLQSWAKLPPQTTVEVKNGKTEKYTIKSTALLIDDALAAVEHENEPLKNVLARDTYAR LQLDPANLRGLIDLVAGIPFTHDRLQARDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVGLIVEMLQPYWGRVYDPAMG SGGFFVEIEKHVERAYDERTHGASGGISVYGQESNPTTWRLAAMNMAIRGIDFNFGKTWANSFTQDQHPDLRADFVMANP PFNVSDWWDAKLADDPRWTHGTPPKGNANFAWVQHMLHHLAPTGSMALLLANGSMSGTSGGEGDIRRALVEADLVECMVA LPGQLFTNTQIPACIWFLTKDKAARNGKRDRRGEVLFLDARGVGYMKDRVLRDFTREDIQKLAGTFHAWQGLGDDEYADI PGFCKSATLAEIAAQGFVLTPGRYVGVAAAEDDGEPFAEKMARLTAELSGQFEESAALEAKIRRNLEGVGYEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 6e-157 | 60 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 6e-127 | 50 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 8e-125 | 49 |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 2e-126 | 49 |
