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Name : pilB (PSMK_20220) Accession : YP_005446078.1 Strain : Phycisphaera mikurensis NBRC 102666 Genome accession: NC_017080 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein PilB Function : - COG functional category : - COG ID : - EC number : - Position : 2384622 - 2386343 bp Length : 1722 bp Strand : + Note : - DNA sequence : ATGGAAGATCTCAAAGGCCGCCGCCTCGGGCGGGTGCTCACGAAGATGGGCGTGGTGACCCGGGACCAGGTGCAGGAGGC GCTGGGCCTGCAGGAGAACCGGCAGGCGACGCTCGGCCAGCTGCTCATCGAGCTCGGCTACGTCGAGCAGGAGCAGCTCA ACGGGGCCCTGGGCTACCAGCAGGGCATGGACACCGTCGACTTGGGGGATTTCGACATCCCCCCGGCGGTCATCGCCATG ATCCCCGCGGAGATGGCGAACACGTACCACGTGCTCCCCCTTCAGTACGACGAGAAGACCAAGAAGCTGACGATCGCGAT GCGGTCGGCGGACAACTACCAGGCGCTCGACACGCTCCGCCTGATGATGGGCTTCAACGTCGAGGCCGTGCTGGCCCCGC CGGATCAGCTCGAGAAGCGGATCGGCCAGTACTACGGGGAAGACGAGGAGTCGCTCGCCTCGCTGGTCGCGGACCTCGCG GACGAGGATGGAGCGGACTTCGAGGTCGACGGATCCAAGAGCATCGACCTTGAGGCTCAGATCGAGATGGCGAACGACAA CCGCGTCGTCCGCCTGCTGAACCTCGTTCTGCTGCAAGCGATCAAGGACAAGGCCTCGGACATCCACTTCGAGCCGTTCG ACGACGAGTTCAAGATGCGGTACCGCATCGACGGCGTGCTGTACGAGATGATCCCGCCGCCGAAGCACCTCGCGATCCCG ATCGTCTCCCGCATCAAGGTGATGGCGAACCTCGACATCGCCGAGCGTCGGCTGCCCCAGGACGGCCGCATCGAGCTCAC CGTCGGTGAAGAGCCCGTCGACCTCCGCGTCGCGGTCCTGCCGACCATGTTCGGGGAGTCGGTGGTGCTGCGGATCCTCG ACCGCTCGAACGTCTCGCTCGACCTGGCCAAGGTCGGCATGCGGGACGACGACCTCGACGCCTTCCGCCAGCTGATCCGC AAGCCCAACGGCATCGTCATCGTCACCGGCCCCACCGGCTCGGGCAAGACGACCACGCTCTACTCCGCCCTCTCCGAACT CAACGGCATCAAGGAGAAGATCCTCACCGCCGAGGATCCGGTGGAGTACGACATCGACGGCCTCATCCAGGTCCAGGTGA ACCCCGCCGTCGGGCTCACGTTCGCCGCCGCGCTGCGCAGCTTCCTCCGGCAGGACCCCGACATCGTGCTCATCGGCGAG ACGCGCGACCTGGAGACGGCGCAGATCGCCGTGCAGGCGTCGCTCACGGGCCACCTCGTGTTCACCACGCTGCACACGAA CGACGCCCCTTCTTCGATCGCGCGTCTCCTGGACCTCGGCCTCGAGAACTTCCTGATCACCGCCACCATCGAGGGCATCC TCGCCCAGCGCCTGATCCGCCGGATCTGCCCGCGCTGCAAAGAGACGTACGAAGCGAGCGAGGACGAGCTGTACGCCCTG CAGCTCACGCTGGAGGACCTCGAAGGCCGCAAGCTCTACCGCGGCCGCGGTTGCGAGTACTGCAACCACTCCGGCTACAA GGGCCGGATGGGTCTGTTCGAGATCATGATCCTCGACGACGACATGCGCGAGCTGATCATGAAGCAGGCGTCCACCCAGC TGTTGCGCAACGAATCGCGCAAGCGCGGCATGCGGACGCTTCGGCAGTCCGGGCTCATGGCGCTTTACGACGGGATGACG ACCATCGAAGAGATCATCCGCGAAACCATGGTCGAAGACTGA Protein sequence : MEDLKGRRLGRVLTKMGVVTRDQVQEALGLQENRQATLGQLLIELGYVEQEQLNGALGYQQGMDTVDLGDFDIPPAVIAM IPAEMANTYHVLPLQYDEKTKKLTIAMRSADNYQALDTLRLMMGFNVEAVLAPPDQLEKRIGQYYGEDEESLASLVADLA DEDGADFEVDGSKSIDLEAQIEMANDNRVVRLLNLVLLQAIKDKASDIHFEPFDDEFKMRYRIDGVLYEMIPPPKHLAIP IVSRIKVMANLDIAERRLPQDGRIELTVGEEPVDLRVAVLPTMFGESVVLRILDRSNVSLDLAKVGMRDDDLDAFRQLIR KPNGIVIVTGPTGSGKTTTLYSALSELNGIKEKILTAEDPVEYDIDGLIQVQVNPAVGLTFAAALRSFLRQDPDIVLIGE TRDLETAQIAVQASLTGHLVFTTLHTNDAPSSIARLLDLGLENFLITATIEGILAQRLIRRICPRCKETYEASEDELYAL QLTLEDLEGRKLYRGRGCEYCNHSGYKGRMGLFEIMILDDDMRELIMKQASTQLLRNESRKRGMRTLRQSGLMALYDGMT TIEEIIRETMVED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-92 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-92 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_005446078.1 | type IV pilus assembly protein PilB | VFG0182 | Protein | 7e-95 | 48 |
| pilB | YP_005446078.1 | type IV pilus assembly protein PilB | VFG2048 | Protein | 3e-93 | 41 |
