Gene Information

Name : PSMK_19890 (PSMK_19890)
Accession : YP_005446045.1
Strain : Phycisphaera mikurensis NBRC 102666
Genome accession: NC_017080
Putative virulence/resistance : Unknown
Product : putative tyrosine recombinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2346886 - 2348049 bp
Length : 1164 bp
Strand : -
Note : -

DNA sequence : 
ATGGGGCTGATGGAGGAAGTTCACGAAGCGCTGCGGCGGGGGCATTACAGCTTCCGCACGGAGCAGGCGTATACGGGGTG
GATCGAGCGCTACCTGCGGCATCACCGGAAGGTGGCTGGGGCGTGGGTGTCGCCCGAGGCGCTTGGCGAGGCCGGGGTCG
AGGCGTTCCTGACGCAACTTGCGGTGGAGCGGAAGGTCGCGGCTTCCACGCAGAACCAGGCGCTCAACGCGCTGGTGTTC
CTGTACGAGAAGGTGCTCGATCAGAAGCTCGGGGCGTTCGAGGCGAAGCGGGCGAAGAAGCCGGCGCGGCTGCCGGAGGT
GCTGAGCCGGGGGGAGGTGGCGGCGGTGCTGGATGCGGTCGCGGAGGCGCCGGCGGATCCGCTCGTCACGCGGATGCACG
GGCTGATGGCGAACCTGCTGTACGGGGCGGGGATGCGGCTGACGGAGGTCACCCGCCTGCGCGTGAAGGACGTGAGCCTG
GAGCGGGGGCGGGTGATGGTGCGGGACGGGAAGGGCGCGAAGGACCGCGCAGCGCTGCTGCCGGAGCGGTGCATCGCGGC
GATGGGGGAGCAGCTGGCGTGGCGGAACCGCCGCCACGAGGCGGACTTGAAGCGGGGCGGGTCGGTGGGCTGGGTGCCGA
TGCCGTACGCGCAGGTGAGGAAGACCCCGGCGGCGAGCCGCTCGCTGGCGTGGCAGTACGTGTTCGCGAGCCCGCGGGTG
ACGCCCACGCCGGTGATGCGGCTGTTCATGGACGGCTCGGCGGCGTCGGGGGGTGCGCCGCTGGAGGATCCCGCGATGAT
GCAGGCGGCTCTCGAGCGGTTGGGGCTGGCGGATTCGCAGGACGTGGAGGTCCGCCGGCACCTCCACGAGAACACGCTGC
AGAAGGCGGTGGCTGCGGCGGTGAAGCGGGCGGGGATCGACAAGAAGGCGTCGTGCCACACGCTGCGGCACTCGTTCGCG
ACGCACCTGCTGGAGGATGGGTACGACATCCGCACGGTGCAGGAGCTGCTGGGGCACAAGAGCGTCAAGACGACCATGCT
GTACCTGCACCTGACCTCGGGCGGCGGGCGCGGGGTGCTGGGGGTGGTGTCGCCGCTGGACCGGGGGGCGGGGAGGCGGG
CTCGCCGGGAGCGGGCCGCACAGCCACGAAGCACCGTCCGTTGA

Protein sequence : 
MGLMEEVHEALRRGHYSFRTEQAYTGWIERYLRHHRKVAGAWVSPEALGEAGVEAFLTQLAVERKVAASTQNQALNALVF
LYEKVLDQKLGAFEAKRAKKPARLPEVLSRGEVAAVLDAVAEAPADPLVTRMHGLMANLLYGAGMRLTEVTRLRVKDVSL
ERGRVMVRDGKGAKDRAALLPERCIAAMGEQLAWRNRRHEADLKRGGSVGWVPMPYAQVRKTPAASRSLAWQYVFASPRV
TPTPVMRLFMDGSAASGGAPLEDPAMMQAALERLGLADSQDVEVRRHLHENTLQKAVAAAVKRAGIDKKASCHTLRHSFA
THLLEDGYDIRTVQELLGHKSVKTTMLYLHLTSGGGRGVLGVVSPLDRGAGRRARRERAAQPRSTVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int1 YP_005160012.1 integrase Not tested Not named Protein 4e-36 41
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 3e-43 41
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-44 41
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 5e-44 41
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 3e-43 41
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-43 41
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-44 41
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-44 41
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 3e-43 41
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-44 41
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-44 41
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 3e-43 41
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-44 41
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-44 41
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 3e-43 41
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-44 41
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-44 41
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 3e-43 41
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-44 41
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-44 41
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 8e-44 41
intI1 AAK02045.1 integrase Not tested SGI1 Protein 3e-43 41
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-44 41
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 8e-44 41
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 3e-43 41
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_19890 YP_005446045.1 putative tyrosine recombinase VFG1028 Protein 3e-44 41