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Name : clpC (CLDAP_38670) Accession : YP_005443804.1 Strain : Caldilinea aerophila DSM 14535 Genome accession: NC_017079 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : - COG ID : - EC number : - Position : 4846762 - 4849215 bp Length : 2454 bp Strand : + Note : - DNA sequence : ATGCGCGCATACGAAATTTTGCAGCACTATAAACATACGCAGGTAGACACCGAACATGTCTTCCTGGCCTTGCTCCAGCA AAGCGGCGGCGCAGTTCCGCAGATCATGCAGGTGCTGCAGGCGCCCGTCGAGGAGATGGCAGAAAAGCTGGCGAACGTGC TGGAGAACATGCCGCGTGCCAGCACCAACCCGTACGGCTCCACCAACACGGCACAGGTGTTTATCACCCCGCGGCTGAAA CGGATCATGGACATCGCCTATGAAGAGGCGATGCGCATGAAGGATGAATACATCAGCACGGAACACATGCTGCTGGCGAT CGCCAGCGAGCGCAACACGCCCAGCGCCAACATTTTGCGCGATGCGATGATCACCAAAGAGCGCATCCTGGAGGCGATCG AGCAGATCCGTAAGGGCCAGCGTGTCACCGAGCCGAACGCCGAGAGCAAATATCGCGTGCTGGAGAAGTACGGCCGCGAC CTGACGCGCGCCGCAAAGGAAGGCAAGCTTGACCCTGTCGTTGGCCGCGAAAGTGAAGTGTTGCGCGTGATCCAGGTCCT GTCGCGACGTACCAAGAACAATCCGGTCTTGATCGGCGAGGCGGGCGTTGGCAAGACGGCCATCGTCGAAGGCCTGGCGC AGAAGATCGTCAACAGAGATGTGCCGGACAACCTGATCGGCAAGCGCGTCATCTCGCTTGACCTGGGTGCGCTGGTGGCG GGCACGCGCTTCCGTGGCGAATTTGAGGAGCGTCTGAAGGCATGCATCGAGGAAATTCAGCGCAGCGAGGGCGAAATTAT CCTCTTCATCGATGAGCTGCACACGATGGTCGGCGCAGGCAACGCCGCAGGCGCCATGGATGCCAGCAACATGCTGAAGC CTGCCCTGGCGCGCGGCGAGCTGCAATGCATCGGCGCTACCACGCTGGACGAGTATCGCGAGCACATCGAACGCGACTCG GCGCTGGAGCGTCGTTTTGCGCCGGTGTATGTCGATGAGCCAAGCATCGAGGACAGCATCGACATCCTGCGTGGGCTGCG CAGCCGGTACGAGGAACATCACCACGTTCGCTATGACGACGAGGCGCTCGTGCAGGCGGTGAAGTTGAGCCACCGCTACG TGACCGACCGTCGCCTGCCCGATAAGGCGATCGACTTGATGGACGAGGCTGCGGCCAAGCTGCGCGTGTCGATGTATCTG ATGCCCCCTCGCCTCAAAGAGATGAAGGCACAGCTCGACGAGCTGCAATCACAGGAAGAGAAGGCGTGGGAGGCGCGCGA CTATGAAAACGCCGCCAAATACAAGGCCGAGCGCGTGCGGCTCGAAGAAGAGTACAACGAACTGGTGGCGAAGTGGCGCG CAGAGACCGACCTCGATGACGTAGTTGATGCGCGGGACATCGCCGCCGTCGTCAGCGCATGGACGGGCATTCCGGTCAGC AACCTGCTGCAGACCGAGACCGAGAAGCTGCTCAACATGGAGGAGATTCTGCGCCAGCGCATCGTCGGTCAGGAGCACGC CATCCAGGCGGTCAGCGATGCCATCCGTCGCGCTCGCAGCGGCCTGAAAGACCCGCGGCGGCCGATCGGCACCTTCCTCT TCCTGGGGCCGACCGGCGTGGGCAAGACCGAGCTGGCCAAGGCGCTGGCTGGTTTCCTGTTTGACGACGATGACGCGCTG CTGCGCATCGACATGAGCGAATATCGCGAGCCGCACACAGTCAGCCGTCTCTTCGGCGCGCCGCCCGGCTATGTCGGCTA CGATCAGGGCGGGCAGCTCACCGAGCAGGTGCGTCGGCGCCCCTATCGTGTCGTGCTCTTTGACGAGATCGAGAAGGCGC ATCCCGATGTGTGGAACGCGTTGCTGCAGATCATGGACGACGGCCGCCTGACCGACGGCCAGGGCCGCCAGGTCGATTTC CGCAACACCGTGATCATCATGACCAGCAACGTCGGCGCGGAGGCGATCAAACGCGGGCCACTGGGCTTTGTCACGCCCAC CTTCGATGAGAGCAAATTCACGCAGAGCGAGTACAGCAATCAGCTCAAGCGGCTCTTCCGGCCCGAGTTCCTGAACCGCA TCGATGAGATCATCGTCTTCGAGCCGTTGAACCGGGAGCAGATTCGCCGCATCGTGCATCTGCTGATGCGCGACATCGGC GCCCGCATGGAGGAGTTAGGCTTCACGGTGGAGATGACCGAGGCTGCCGCCGATCACGTGGCCGAGGTGGGCTACGATCC GAACTACGGCGCTCGCCCGCTGCGGCGGCTGCTCCAGCGCAACGTGGAAAACGAGCTGAGCAAGCGGCTGCTGCGGGGCG AATACAAGACCGGCGATCATGTCATCGTCGACTACGACCCCAACGCCGAGGGCGACAACAAGCTGGTCTTCCGCCTCGCC GAGCCGACGCCGATCGCAGTCGATTTGCCGGTGGACAACGTACACGCCGAGTAA Protein sequence : MRAYEILQHYKHTQVDTEHVFLALLQQSGGAVPQIMQVLQAPVEEMAEKLANVLENMPRASTNPYGSTNTAQVFITPRLK RIMDIAYEEAMRMKDEYISTEHMLLAIASERNTPSANILRDAMITKERILEAIEQIRKGQRVTEPNAESKYRVLEKYGRD LTRAAKEGKLDPVVGRESEVLRVIQVLSRRTKNNPVLIGEAGVGKTAIVEGLAQKIVNRDVPDNLIGKRVISLDLGALVA GTRFRGEFEERLKACIEEIQRSEGEIILFIDELHTMVGAGNAAGAMDASNMLKPALARGELQCIGATTLDEYREHIERDS ALERRFAPVYVDEPSIEDSIDILRGLRSRYEEHHHVRYDDEALVQAVKLSHRYVTDRRLPDKAIDLMDEAAAKLRVSMYL MPPRLKEMKAQLDELQSQEEKAWEARDYENAAKYKAERVRLEEEYNELVAKWRAETDLDDVVDARDIAAVVSAWTGIPVS NLLQTETEKLLNMEEILRQRIVGQEHAIQAVSDAIRRARSGLKDPRRPIGTFLFLGPTGVGKTELAKALAGFLFDDDDAL LRIDMSEYREPHTVSRLFGAPPGYVGYDQGGQLTEQVRRRPYRVVLFDEIEKAHPDVWNALLQIMDDGRLTDGQGRQVDF RNTVIIMTSNVGAEAIKRGPLGFVTPTFDESKFTQSEYSNQLKRLFRPEFLNRIDEIIVFEPLNREQIRRIVHLLMRDIG ARMEELGFTVEMTEAAADHVAEVGYDPNYGARPLRRLLQRNVENELSKRLLRGEYKTGDHVIVDYDPNAEGDNKLVFRLA EPTPIAVDLPVDNVHAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-173 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_005443804.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 51 |
| clpC | YP_005443804.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 6e-145 | 51 |
