Gene Information

Name : CLDAP_26710 (CLDAP_26710)
Accession : YP_005442608.1
Strain : Caldilinea aerophila DSM 14535
Genome accession: NC_017079
Putative virulence/resistance : Virulence
Product : putative manganese ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3332057 - 3332845 bp
Length : 789 bp
Strand : -
Note : -

DNA sequence : 
ATGACAACACCAGCCATTGAAGTTTGTAACCTGACCGTGGCCTATCAAGACAAACCGGTGCTCTGGGAGGTGGATATGCA
GGCGCCATCGGGCGCGCTGATGGCTATCGTCGGCCCAAACGGCGCCGGCAAGACCACGCTGATCAAGGCGATCCTGGGGC
TGGTGCGGCCGCTGGCAGGGCAGGCGCTCATCTACGGCAAGCCCTACTCGCAGCAGCGCCATCTGGTGGCGTACGTGCCG
CAGCGCAACAGCGTTGATTGGGACTTCCCCACCAGTGTGCTGGACGTGGTCATGATGGGGCGTTATGGCGCACTGGGCTG
GCTCAGGCGACCTGGCCCGGCCGAGCGCAGCGCTGCGCTGGATGCGCTGGACAAAGTCGGGATGGTCGACTTCGCCGAGC
GGCAGATCGGGCAGCTTTCGGGCGGTCAGCAACAGCGCGTGTTTCTTGCTCGCGCGCTCGTTCAAAACGCCCAGGTCTAT
CTCATGGACGAGCCATTCCAGGGGGTCGACGCCACGACGGAGCGGGCGATTGTGCGGCTGTTGCAGGAGCTGCGCTCACA
GGGGAAAACCGTACTCGTTGTGCACCACGATCTGCAGACAGTTCCCGAGTATTTCGACTGGGTGATGATGCTTAACGTGC
GCCGCATCGCCTGTGGGCCGGTGAATGAAGTCTTCACCGAACAAAATTTGCGCGCAACCTATGGCGGCAAGATCGCCTTT
TTGCACACCAACAGCGTCGGAGAAGTTCATGATGGACATCGGCCAGCTCTTTCACAACCTGCTCTTTGA

Protein sequence : 
MTTPAIEVCNLTVAYQDKPVLWEVDMQAPSGALMAIVGPNGAGKTTLIKAILGLVRPLAGQALIYGKPYSQQRHLVAYVP
QRNSVDWDFPTSVLDVVMMGRYGALGWLRRPGPAERSAALDALDKVGMVDFAERQIGQLSGGQQQRVFLARALVQNAQVY
LMDEPFQGVDATTERAIVRLLQELRSQGKTVLVVHHDLQTVPEYFDWVMMLNVRRIACGPVNEVFTEQNLRATYGGKIAF
LHTNSVGEVHDGHRPALSQPAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-53 47
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-53 47
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-53 47
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 8e-53 47
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 8e-53 47
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-44 46
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-44 46
unnamed CAD33755.1 putative ABC transporter ATP-binding protein Virulence PAI I 536 Protein 6e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLDAP_26710 YP_005442608.1 putative manganese ABC transporter ATP-binding protein BAC0400 Protein 3e-75 59
CLDAP_26710 YP_005442608.1 putative manganese ABC transporter ATP-binding protein BAC0350 Protein 3e-53 47
CLDAP_26710 YP_005442608.1 putative manganese ABC transporter ATP-binding protein BAC0440 Protein 8e-51 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLDAP_26710 YP_005442608.1 putative manganese ABC transporter ATP-binding protein VFG0526 Protein 2e-53 47
CLDAP_26710 YP_005442608.1 putative manganese ABC transporter ATP-binding protein VFG1496 Protein 3e-32 41