Gene Information

Name : CLDAP_18260 (CLDAP_18260)
Accession : YP_005441763.1
Strain : Caldilinea aerophila DSM 14535
Genome accession: NC_017079
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2295485 - 2296303 bp
Length : 819 bp
Strand : +
Note : -

DNA sequence : 
ATGTTGAAAGCGCGAGATCTGACCCTTGCATACGACGATAAAACTATCATCATTGAGGCGCTCGGTTTGACTATCCCTGC
TGGCAAAATCACAGCTCTGGTTGGACCTAATGGCTGCGGCAAAAGCACCCTTCTGCGCGGGCTGGCGCGGCTGCTGAAGC
CGCGCCAGGGTGCTGTATTGCTCAACGGCCAGGACATTCATCGTCTGCCTACGCGCACGCTGGCCAAACAGCTCGGCATC
CTGCCGCAGGGGCCGGTGGCGCCAGAAGGGTTGACCGTGCGCGAGCTGGTGGCCCAAGGGCGCTATCCGCATCAATCCTG
GTTTCAACAGTGGGCTGCGGATGATGAGGCCGCAGTGACAAGGGCCCTGGAGATCACAGGAATGCTGCCGCTGGCCGACC
GGCCGGTCGACGCCCTTTCCGGTGGTCAGCGACAGCGCGCCTGGATTGCCATGACGCTGGCGCAGGAGACCGAGATCATC
TTGCTGGATGAACCGACTACCTTCCTTGATCTGGCGCATCAAATCGAAGTCCTGCATCTGCTCGAACGGCTCAACCGTGA
AGAAGGGCGCACCATTGTGATGGTGGTGCATGACTTGAATCACGCCACGCGCCATGCCCAACATATTGTGGCGTTGCGCA
AGGGCTGTGTAGTGGCGAGCGGTGATCCGCACACCGTTGTGACGCAAGAGCTATTGCGCGAGGTGTTCGGCGTGGATGCC
GACATCATACCCGATCCGCGCACGGGTCTGCCGCTTTGTCTGCCCTATGGTCTTACCCATGAACAAGGCGTTGAAGCGAA
GATAGAAGCCGGGCGTTAA

Protein sequence : 
MLKARDLTLAYDDKTIIIEALGLTIPAGKITALVGPNGCGKSTLLRGLARLLKPRQGAVLLNGQDIHRLPTRTLAKQLGI
LPQGPVAPEGLTVRELVAQGRYPHQSWFQQWAADDEAAVTRALEITGMLPLADRPVDALSGGQRQRAWIAMTLAQETEII
LLDEPTTFLDLAHQIEVLHLLERLNREEGRTIVMVVHDLNHATRHAQHIVALRKGCVVASGDPHTVVTQELLREVFGVDA
DIIPDPRTGLPLCLPYGLTHEQGVEAKIEAGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-67 52
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-56 48
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-56 48
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-56 48
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-56 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-59 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-59 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-59 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-59 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-57 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-54 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-56 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-56 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLDAP_18260 YP_005441763.1 putative ABC transporter ATP-binding protein BAC0164 Protein 1e-57 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLDAP_18260 YP_005441763.1 putative ABC transporter ATP-binding protein VFG0925 Protein 1e-64 54
CLDAP_18260 YP_005441763.1 putative ABC transporter ATP-binding protein VFG1042 Protein 1e-57 47