Gene Information

Name : CLDAP_18000 (CLDAP_18000)
Accession : YP_005441737.1
Strain : Caldilinea aerophila DSM 14535
Genome accession: NC_017079
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2260901 - 2261665 bp
Length : 765 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTTTCTTTTCCTATGCAGGGCGTCATGAAGTCTGTCCGGTCGCCGGCGAGCCTGCGCTCACGGTACGCGACCTGTA
CGCTGGCTACGGTCAGCACAATGTGCTCCAGGGTGTGACGATGCGCGTGGCGGTGGGCGCGCGCGTGGCGTTGATCGGCG
CCAACGGCGCGGGCAAATCGACGCTTTTCAAGACGGTGGCGGGGCTTCTGCCTGTTCGCAGCGGGGAGGTGCGCATCTAC
GGCCGCCCGGTGGGCGCCTGCCATCACCGCGTCGCCTATCTTCCTCAACGCAGCGAGATCGACTGGCATTTTCCGATCAC
AGTGCGTCGGCTGGTGGTCAGTGGCCGCTATGTGCATCTTGGCTGGTTTCGGCGTCCACGTGCGGAAGACTGGCACATCG
TAGACGCAATGCTGGCGCGGCTGCAGATCGACGATCTGGCCGAACGCCAGATTGGGCAGTTGTCCGGCGGACAGCAGCAG
CGCGTGATGCTGGCGCGTGCGCTGGCACAAGGCGCGGATCTCTTGCTGCTCGATGAGCCGCTCAACGCCGTCGATGCGGA
GACGCGCGCCATCGTGGCAGCCGTGCTGGCCGAGGAAAAGGCCAACGGACGCACCATCGTCGTGGCCACCCATGACCTGG
ATCGGCTGGAGAGCGATTACGATGCGGTGATTCGTCTGGAGGATGGTAGAGCCTATGGGGAAGCCGTCTTGCATGTACCG
GAGCAGGTGCTGCCGGTGTTGACGCCAGGAGTTATCCATGCTTGA

Protein sequence : 
MFFFSYAGRHEVCPVAGEPALTVRDLYAGYGQHNVLQGVTMRVAVGARVALIGANGAGKSTLFKTVAGLLPVRSGEVRIY
GRPVGACHHRVAYLPQRSEIDWHFPITVRRLVVSGRYVHLGWFRRPRAEDWHIVDAMLARLQIDDLAERQIGQLSGGQQQ
RVMLARALAQGADLLLLDEPLNAVDAETRAIVAAVLAEEKANGRTIVVATHDLDRLESDYDAVIRLEDGRAYGEAVLHVP
EQVLPVLTPGVIHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-33 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-33 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-33 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-33 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-33 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLDAP_18000 YP_005441737.1 putative ABC transporter ATP-binding protein BAC0400 Protein 3e-33 47
CLDAP_18000 YP_005441737.1 putative ABC transporter ATP-binding protein BAC0350 Protein 1e-33 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLDAP_18000 YP_005441737.1 putative ABC transporter ATP-binding protein VFG0526 Protein 1e-33 43