Gene Information

Name : pilR (RGE_42340)
Accession : YP_005439069.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : two-component system response regulator PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4543483 - 4544925 bp
Length : 1443 bp
Strand : -
Note : -

DNA sequence : 
GTGAGCGCTCCCACGCCGCCCCGATTGCTCGTCGTCGACGACGAGCCCGATCTGCGCACGCTCTACGAGCTGACGCTGCT
GCGCGAGGGCTACGACGTCGAGAGCGCGGAGACCGTCGAGGAGGCCTGGGCGGCGCTGCAGTCGCGCCGCTTCCAGCTGC
TGATCACCGACATGCGCCTGCCCGACGGCACCGGGCTGGACCTGCTGCGCCGGCTGGAGGACGCCGGCCGCGGCGAGAAG
GGCATCGTCATCACCGCCTACGGCTCGGCCGAGAACGCCGTCGAGGCGCTGAAGGCCGGCGCCTACGACTACCTGACCAA
GCCGGTGGACCTGCGCCAGTTCCGCGCCGTCGTCGCCTCGGCGCTGGGGCGCACGCCGTCCGACGGCGCCCGCGCGGCGC
GGCCGGCCGAGGCGCGCCACGCGCTGCCGCCGCGCCGTGCGCTCGACCGCATGGTCGGCGATTCGGTCGCGCTGCAGCAG
GTGCGCAGCCTGGTCGGCAAGGTCGCGCGCAGCATGGCGCCGGTGCTGGTGCACGGCGAGTCGGGCACCGGCAAGGAGCT
GGTGGCGCGCGCGATCCACGAGCTCTCGCCGCGCCACGCGATGCCTTTCGTCGCCGTCAACTGCGGCGCGATCCCCGAGA
CGCTGCTCGAAGCCGAGTTCTTCGGCTACCGGCGCGGCGCCTTCACCGGCGCCGTCGAGGACCGCGAAGGCTTCTTCCAG
GCCGCCCAGGGCGGCACGCTGTTCCTCGACGAGATCGGCGACCTGCCGCTGGCGATGCAGAGCAAGCTGCTGCGCGCGGT
GCAGGAACGTGCGGTGCGGCCGCTGGGTGCGCCGGCCGAGCTGGCGGTCAACGTGCGCATCGTCAGTGCCACGCACAAGG
ATCTGGCCGCCGAGGTGCACGCCGGGCGCTTCCGCCAGGACCTGTTCTACCGCCTGAACGTCATCGAGATCGTCGTGCCG
CCGCTGCGCGAGCGGCTGGGAGACCTGCCCGCGATCGCCGCCGCGGTGCTCGAACGCATCGCCGGCGACGCCGGCGTGTC
GCCGCCGCCGGTGCTGTCGGCCGAGGCGCTGGCGCATCTGTCGCGCTACGCCTTCCCGGGCAACGTGCGCGAGCTGGAGA
ACCTGCTGCACCGTGCCGTCACGCTGGCCGGCGGCAGCGTCGTCGAGTGCCGCGACCTGGGCCTGCCCGAGGTCGCGTTC
GCCGACTCCGCGCACCTCGACCTGGAGATGGCGGTGCCCGACCCGGGGCGCGCCGCCGCCACCGAAGTGCCGCTGCCCAG
CGACCTCGCGGCCTACCTCGACCAGGTCGAGCGCGAGATCCTCGAGCGTGCGCTCGAGCGCCACCGCTACAACCGCACCG
CCGCCGGCGCCAGCCTCGGGCTGTCGCTGCGCCAGATGCGCTACCGCATGGCGCGGCTGGGCATCGGCAGCGGCGACGAC
TGA

Protein sequence : 
MSAPTPPRLLVVDDEPDLRTLYELTLLREGYDVESAETVEEAWAALQSRRFQLLITDMRLPDGTGLDLLRRLEDAGRGEK
GIVITAYGSAENAVEALKAGAYDYLTKPVDLRQFRAVVASALGRTPSDGARAARPAEARHALPPRRALDRMVGDSVALQQ
VRSLVGKVARSMAPVLVHGESGTGKELVARAIHELSPRHAMPFVAVNCGAIPETLLEAEFFGYRRGAFTGAVEDREGFFQ
AAQGGTLFLDEIGDLPLAMQSKLLRAVQERAVRPLGAPAELAVNVRIVSATHKDLAAEVHAGRFRQDLFYRLNVIEIVVP
PLRERLGDLPAIAAAVLERIAGDAGVSPPPVLSAEALAHLSRYAFPGNVRELENLLHRAVTLAGGSVVECRDLGLPEVAF
ADSAHLDLEMAVPDPGRAAATEVPLPSDLAAYLDQVEREILERALERHRYNRTAAGASLGLSLRQMRYRMARLGIGSGDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-80 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-80 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_005439069.1 two-component system response regulator PilR BAC0467 Protein 4e-69 43
pilR YP_005439069.1 two-component system response regulator PilR BAC0089 Protein 6e-68 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_005439069.1 two-component system response regulator PilR VFG1214 Protein 6e-103 51