Gene Information

Name : dctM (RGE_32480)
Accession : YP_005438086.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3467117 - 3468406 bp
Length : 1290 bp
Strand : -
Note : -

DNA sequence : 
GTGGACACCGCCCTCATCGCGCTGCTCTTCATCGGTTCCATGCTCGGCCTGATGGCGCTGGGCATGCCGATGGCCTTCGC
CCTCGTGCTCACCGGCGCCTCGATGGCCTGGGCGCTGGACTTCTTCGACACCCAGCTGCTGGCGCAGAACCTCGTCGCCG
GCATCGACAGCTTCCCGCTGCTGGCGGTGCCGTTCTTCATCCTCGCCGGCGAGCTGATGAACGCCGGCGGCATCAGCCGC
CGCATCATCGCGATGGCCCAGGCCTGGGTCGGCCACGTGCGCGGCGGGCTGGGCTTCGTGACGATCGGCGCGGCGGTGCT
GATGGCCAGCATGAGCGGCTCGGCGCTGGCCGACACCGCGGCGCTGGCGACGATCCTGCTGCCGATGATGCGCGCCCACG
GCTACCCGGCCAACACCTCGGCCGGGCTGATCGCCTCGGGCGGCATCATTGCGCCGATCATCCCGCCGTCGATGCCCTTC
GTGATCTACGGCGTCACGACCAACACCTCGATCTCGCAGCTGTTCCTGGCCGGCATCGTGCCCGGGATCATCATGGGCGT
CGGCCTGGTCATCGCCTGGAAGCTGGTGCTGCGCGGCATCGACGTGCAGCGCGACGAGAAGCTGCCGCTGGCCGCGCGCG
GGCGTGCCACCGTCGACGCGTTCTGGGCCTTGCTGATGCCGGTGATCATCATCGGCGGCATGAAGAGCGGCCTGTTCACG
TCGACCGAGGCCGCGGTCGTGGCCGCCTTCTACGCGCTGGTCGTCGCGGTCTTCGTGCACCGCGAGATGTCCTGGCGCGA
GCTGCACGGCGTGCTGGTGCGCGCCGCGCGCACCACGGCCATCGTGATGTTCCTCTGCGCCGGCGCCTCGGTGGCCAGCT
ACATGGTGACGCTGGCCGACCTGCCGGCGGCGCTGGCCGGCATGCTGGGGCCGCTGATCGAGCATCCCAAGCTGCTGATG
GCGGTGATGATGATCACGCTGATCGCCGTCGGCACCGCGCTGGACCTGACGCCGTCGATCCTGATCCTGGCGCCGGTGAT
GCTGCCGGTGGCCGTCAAGGCCGGCATCGACCCGGTCTACTTCGGCCTGATGTTCGTGCTCAACGGCGCCATCGGGCTCA
TCACGCCGCCGGTGGGCACGGTGCTCAACGTCGTCGCCGGCGTCGGCCGCATGCGCCTGGACCAGGTGGTGCGCGGCGTC
TCGCCCTTCCTCGCGACCTACCTCGTGATCCTCGCGCTGTTCGTCGCCTTCCCGCAGATCGTCACCGCGCCGCTGGCGTG
GCTGCGCTGA

Protein sequence : 
MDTALIALLFIGSMLGLMALGMPMAFALVLTGASMAWALDFFDTQLLAQNLVAGIDSFPLLAVPFFILAGELMNAGGISR
RIIAMAQAWVGHVRGGLGFVTIGAAVLMASMSGSALADTAALATILLPMMRAHGYPANTSAGLIASGGIIAPIIPPSMPF
VIYGVTTNTSISQLFLAGIVPGIIMGVGLVIAWKLVLRGIDVQRDEKLPLAARGRATVDAFWALLMPVIIIGGMKSGLFT
STEAAVVAAFYALVVAVFVHREMSWRELHGVLVRAARTTAIVMFLCAGASVASYMVTLADLPAALAGMLGPLIEHPKLLM
AVMMITLIAVGTALDLTPSILILAPVMLPVAVKAGIDPVYFGLMFVLNGAIGLITPPVGTVLNVVAGVGRMRLDQVVRGV
SPFLATYLVILALFVAFPQIVTAPLAWLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-33 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-33 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 9e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
dctM YP_005438086.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 5e-34 41