Gene Information

Name : tetR (RGE_29770)
Accession : YP_005437815.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : TetR family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3161356 - 3161976 bp
Length : 621 bp
Strand : +
Note : -

DNA sequence :
ATGACCGACCGTGCCCGACTCCACCGCGACGACGTGCTGCGCGCCGCCCTCGAGCTGTTGAACGAGGTCGGCATCGACGC
GCTGACCACCCGCAGGCTGGCCGAGCGCCTGGGCGTGCAGTCGCCGACGCTGTACTGGCATTTCGAGAGCCGCGCCGCGC
TGCTGGACGCGATGTCGGCCGCCGTCATGCTGGAAAGCCGTGCCCGGCTGTCCCCCGACCCGCAGCAGCCCTGGCAGGAC
TGGCTGATGGCCGACGGCCTGAGCTTCCGCCGTGCGCTGCTGGCCTACCGCGACGGCGCGCGGCTCCATGCCGGCACCCG
GCCTGGCAAGGCCCAGCACGAGCCCATCGAGGCCCGGCTGCGCATGCTGCACGCGGCCGGCTTCACGCCGGTCGCTGCGA
CGACGCTGCTGATGTCGGTGGGTCGTTTCGTCGTCGGCTGGGTGCTGGAGGAACAGTCGATCCAGCAGCCCGATGCCCTG
GCGGCCGCCGCGATTCCCGACGCCACGCAATACCCGCTGCTGGCCGAAGGCTGGGCCGCGACGGTGGGCGGCGATGCCGA
CCTGTTGTTCGAGCGCGCGCTGCGTCTGCTCCTGGACGGAGCCCAGGCGCGACGGCGCTGA

Protein sequence :
MTDRARLHRDDVLRAALELLNEVGIDALTTRRLAERLGVQSPTLYWHFESRAALLDAMSAAVMLESRARLSPDPQQPWQD
WLMADGLSFRRALLAYRDGARLHAGTRPGKAQHEPIEARLRMLHAAGFTPVAATTLLMSVGRFVVGWVLEEQSIQQPDAL
AAAAIPDATQYPLLAEGWAATVGGDADLLFERALRLLLDGAQARRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetR AAK02050.1 tetracycline resistance regulator protein Not tested SGI1 Protein 6e-35 52
tetR ABZ01841.1 TetR Not tested SGI2 Protein 6e-35 52
tetR CAJ77033.1 Tetracycline repressor protein Not tested AbaR1 Protein 6e-35 52
tetR(G) AGK06973.1 TetR(G) Not tested SGI1 Protein 6e-35 52
tetR(G) AGK07103.1 TetR(G) Not tested SGI1 Protein 6e-35 52
tetR AEA34668.1 tetracycline repressor protein Not tested Not named Protein 2e-31 47
BJAB07104_00278 YP_008207743.1 Transcriptional regulator Not tested AbaR25 Protein 2e-31 47
BJAB0868_00282 YP_008211608.1 Transcriptional regulator Not tested AbaR26 Protein 2e-31 47
tetR AFV47998.1 repressor protein TetR Not tested delta-AbaR25 Protein 2e-31 47
tetR(B) AEZ06046.1 repressor protein Not tested Tn6167 Protein 3e-31 47
tetR AAL08444.1 tet repressor Not tested SRL Protein 8e-30 47
ABZJ_00261 YP_005524217.1 tetracycline repressor protein TetR Not tested AbaR22 Protein 3e-31 47
tetR AFH57203.1 repression protein Not tested AbaR4a Protein 2e-31 47
tetR YP_005797161.1 tetracycline repressor protein class G Not tested AbaR4e Protein 3e-31 47
tetR AFV47970.1 repressor protein TetR Not tested AbaR25 Protein 2e-31 47
tetR(B) AEQ20906.1 tetracycline repressor protein Not tested Tn6166 Protein 3e-31 47
tetR1 YP_005176239.1 tetracycline repressor protein Not tested ICEPmu1 Protein 8e-34 44
tetR2 YP_005176247.1 tetracycline repressor protein Not tested ICEPmu1 Protein 8e-34 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetR YP_005437815.1 TetR family transcriptional regulator VFG1035 Protein 3e-30 47