Gene Information

Name : tetA (RGE_29760)
Accession : YP_005437814.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein, class A TetA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3160097 - 3161290 bp
Length : 1194 bp
Strand : -
Note : -

DNA sequence : 
GTGAACCGAGCTTTGACCGTCATCCTGCTGACGCTGGCGCTGGACGCCGTCGGCATGAGCCTGGTGTTCCCCATCCTGCC
CGGCCTGCTGCGTGAACTCGCCGGTGCCGACGCCACCGCCTACCACTACGGCGCGCTGCTGGCCGTCTATGCGGCGATGC
AGTTCCTGTTCTCCCCGGTGCTGGGCGCCTTGAGCGACCGCTACGGCCGCCGGCCGGTGCTGCTGGCCTCGCTGGCCGGC
GCGGCGGCCGACTACGTGCTGATGGCGCTGGCGCCCAACCTGGCCTGGCTGTACGTCGGCCGCGTGCTGTCCGGTGTCAC
CGGCGCCAGCATGGCGGTGGGCACGGCCTACATCACCGACGTCACCGACGAGCCCGACCGCGCCCGGCGCTACGGCCAGA
TGGGCGCGGCGCTGGGCCTGGGCTTCGTCGTCGGGCCGCTGATCGGCGGCGCGCTCGGCGAATGGTCGCTGCGTGCGCCC
TTCCTGGCAGCGGCGGCGATGAACGCGCTGAACCTGCTGCTCGCCTGGCGCGTGCTGCCCGAGTCCAACCAGCACCGCAC
GGCCGCGCTGGAAGTCGTCAAGCTCAGCGCCTTCTCGGCGCTGCACCGCCTGCAGGGCCGGCGGCCGCTGCTGCCGCTGG
TCGGCGTGTTCGCCGTCGTCGCGCTGGTGTCGCAGGTGCCGGGCTCGCTGTGGATCCTGTACGGGCAGGAGCGTTACGGC
TGGACCGCCTGGGTCGCGGGCCTGTCGCTGGCCTGCTACGGCGGCCTGCATGCCGTCTCGCAGGCCTTCGTCACCGGGCC
GCTGGTGGCCCGGCTCGGCGAGCGGCGCGGGCTGCTGGTCGGCATGGCCGCCGACGGCCTGGGCTTCGTGCTGATCGGCG
TGGCGACGGTGGGCTGGATGCCGTTCGCGCTCTTGCCGCTGTTCGCCGCCGGCGGCCTGGCCTTGCCGGCGCTGCAGGCG
ATGCTGGCGCGCCAGGTCGACGAGCAGCACCAGGGCGAGCTGCAGGGCACGCTGGCCAGCCTCACGAGCCTGATCGGCGT
CGGCGGGCCGCTGGTCGTCACGGCGGCCTTCGCGGCGACGCAGCAGTCTGCGCCGGGCAGCGTCTGGATCGCCGCGGCGC
TGTTCTACCTGCTGGCGCTGCCGCTGCTGTTCAGCCGGCGCGCGCGCGAAGGCGAGAGCCAACCGACTCCCTGA

Protein sequence : 
MNRALTVILLTLALDAVGMSLVFPILPGLLRELAGADATAYHYGALLAVYAAMQFLFSPVLGALSDRYGRRPVLLASLAG
AAADYVLMALAPNLAWLYVGRVLSGVTGASMAVGTAYITDVTDEPDRARRYGQMGAALGLGFVVGPLIGGALGEWSLRAP
FLAAAAMNALNLLLAWRVLPESNQHRTAALEVVKLSAFSALHRLQGRRPLLPLVGVFAVVALVSQVPGSLWILYGQERYG
WTAWVAGLSLACYGGLHAVSQAFVTGPLVARLGERRGLLVGMAADGLGFVLIGVATVGWMPFALLPLFAAGGLALPALQA
MLARQVDEQHQGELQGTLASLTSLIGVGGPLVVTAAFAATQQSAPGSVWIAAALFYLLALPLLFSRRAREGESQPTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 8e-65 54
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 8e-65 54
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 8e-65 54
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 8e-65 54
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 1e-67 53
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 5e-70 53
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 4e-70 53
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 4e-70 53
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 4e-70 53
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 5e-70 53
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 4e-70 53
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 5e-51 41
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 4e-51 41
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 6e-51 41
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 6e-51 41
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 6e-51 41
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 6e-51 41
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 7e-51 41
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 4e-50 41
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 5e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AY264780.2.gene3.p01 Protein 2e-99 67
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AY743590.gene.p01 Protein 4e-87 56
tetA YP_005437814.1 tetracycline resistance protein, class A TetA Y19114.gene.p01 Protein 2e-74 55
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AF133139.gene.p01 Protein 9e-66 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_010410.6002612.p0 Protein 6e-68 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AF133140.gene.p01 Protein 6e-68 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_011586.7045189.p0 Protein 2e-64 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA CP001485.1.gene2821. Protein 2e-70 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AF534183.gene.p01 Protein 2e-70 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_010410.6002597.p0 Protein 2e-70 53
tetA YP_005437814.1 tetracycline resistance protein, class A TetA X75761.gene.p01 Protein 9e-69 52
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AF090987.gene.p01 Protein 1e-69 51
tetA YP_005437814.1 tetracycline resistance protein, class A TetA L06798.gene.p01 Protein 8e-50 44
tetA YP_005437814.1 tetracycline resistance protein, class A TetA L06940.gene.p01 Protein 5e-52 44
tetA YP_005437814.1 tetracycline resistance protein, class A TetA Y19116.gene.p01 Protein 2e-50 44
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AF121000.gene.p01 Protein 1e-51 43
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AF070999.gene.p01 Protein 6e-56 43
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_010558.1.6275971. Protein 3e-51 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AB084246.gene.p01 Protein 1e-51 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_011595.7059241.p0 Protein 3e-49 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_011586.7043399.p0 Protein 8e-49 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA V00611.gene.p01 Protein 1e-50 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_010410.6003291.p0 Protein 2e-49 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA AJ420072.gene.p01 Protein 8e-50 41
tetA YP_005437814.1 tetracycline resistance protein, class A TetA NC_009085.4918440.p0 Protein 4e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetA YP_005437814.1 tetracycline resistance protein, class A TetA VFG1036 Protein 3e-51 41