Gene Information

Name : lfiP (RGE_19580)
Accession : YP_005436798.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : lateral flagellar export/assembly protein LfiP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2045016 - 2045789 bp
Length : 774 bp
Strand : -
Note : -

DNA sequence : 
ATGAATCTGGCCTGGGCCACCCCGCGCTGGACGCGTGCGGCGCGCTGGGCGCTGGCCGCCGGGCTGCTGGTGGCCGGCGC
CTCGGCGCTGGCCGCCAACGGCGTGCCGGTGCTCAGCACGACGACGCGCGGCGCGACCACCGACTTCACGGTGAAGACCC
AGATCGTCATCCTGATGACGCTGCTGGGCCTGCTGCCGGCGCTCGTCCTGATGATGACCAGCTTCACGCGCTTCGTCATC
GTGCTGGCGCTGCTGCGCCAGGCGCTGGGGCTGCAGCAGGGGCTGCCCAACCGCATCATCACCGGCGTCGCGCTGATCCT
CACCTGCCTGGTGATGCGCCCGGTCGGCGAGCGCATCTGGACCGACGCCCTCGTGCCCTACGACGAGGAGCGCATCGTGA
TGAGCGAGGCGCTGGAACGCGCCGCCAAGCCGATCTCGGCCTTCATGCTCGCCCAGACCAGCAAGACCGCGCTGGCGCAG
ATCTCGCGGCTGGCCGGCGAGGCGCCGGTGGCCAAGCCCGAGGAACACGCCTTCACCGTCAAGCTCGCGGCCTTCGTGCT
CAGCGAGCTGAAGACGGCGTTCCAGATCGGCTGCATGCTGTTCATCCCCTTCCTGGTCATCGACCTGGTGGTGTCCTCGC
TGCTGATGGCGATGGGCATGATGATGCTGTCGCCGCTCGTGATCTCGCTGCCGCTGAAGCTGCTGCTGTTCGTGCTCGTC
GACGGCTGGACGCTGACCGTGGACACGCTGGTCACCAGCGTGCAGAAGTTCTAG

Protein sequence : 
MNLAWATPRWTRAARWALAAGLLVAGASALAANGVPVLSTTTRGATTDFTVKTQIVILMTLLGLLPALVLMMTSFTRFVI
VLALLRQALGLQQGLPNRIITGVALILTCLVMRPVGERIWTDALVPYDEERIVMSEALERAAKPISAFMLAQTSKTALAQ
ISRLAGEAPVAKPEEHAFTVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSLLMAMGMMMLSPLVISLPLKLLLFVLV
DGWTLTVDTLVTSVQKF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-08 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-08 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-08 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-08 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-08 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-08 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-08 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lfiP YP_005436798.1 lateral flagellar export/assembly protein LfiP VFG1259 Protein 7e-25 54
lfiP YP_005436798.1 lateral flagellar export/assembly protein LfiP VFG2016 Protein 4e-22 53
lfiP YP_005436798.1 lateral flagellar export/assembly protein LfiP VFG2494 Protein 6e-23 48