Gene Information

Name : RGE_18300 (RGE_18300)
Accession : YP_005436670.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1911860 - 1912591 bp
Length : 732 bp
Strand : +
Note : -

DNA sequence : 
ATGGACACGACCCCGCACCACCTCTTCGTCGTCGAGGACGACCCCGCGATGCGCGACATGCTGTCGGCGTACCTTGAACG
CCAGGGCCTGTCGGTGACGCCGATGTCCAGCGCCGAGGAGATGATGCGGCGCATCCACCGTCGCCGGCCCGACCTGATCG
TGCTCGACGTGATGCTGCCCGGCGAGTCGGGCGTCGACGCCTGCCGCCGCCTGCGCGCCGAAGGCGACCGCGTGCCGATC
ATCCTGCTGACCGCGCGCACCGAGGAGGTCGACCGCGTGCTGGGGCTGGAGATGGGCGCCGACGACTACCTCGGCAAGCC
GTTCTCGGCGCGCGAGTTGCTGGCGCGCATCCGCGCCGTGCTGCGCCGCACGAGTTCGCTGCCCGGCGTGCCCGCGCCCA
GCGACCGCGAGGTGCGCATCGGTGCGCACACCTTCGTGCCGGCGACACGCAGCCTTCACGCCGCCAACGGCGAGCTGCGC
GTGCTGTCCACCGTCGAGTACTCGATCCTCGCCGAGCTGGTGGCCAACCCGCACGTGCCGATCTCGCGCGAGCGCCTGCT
GTCGGTGTCGCACACGCGCGGCGAGGAGCTGCTGGCGCGCACCGCCGACGTCGCGGTGATGCGGCTGCGCAAGATCGTCG
AGCCCGACCCGGCGATGCCGCGCTACATCCAGACGGTGCGCGGCCACGGCTACATGTTCGTGCCCCACCTGCCGCGGCCG
ATGGCCGCCTGA

Protein sequence : 
MDTTPHHLFVVEDDPAMRDMLSAYLERQGLSVTPMSSAEEMMRRIHRRRPDLIVLDVMLPGESGVDACRRLRAEGDRVPI
ILLTARTEEVDRVLGLEMGADDYLGKPFSARELLARIRAVLRRTSSLPGVPAPSDREVRIGAHTFVPATRSLHAANGELR
VLSTVEYSILAELVANPHVPISRERLLSVSHTRGEELLARTADVAVMRLRKIVEPDPAMPRYIQTVRGHGYMFVPHLPRP
MAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-13 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RGE_18300 YP_005436670.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 3e-52 47
RGE_18300 YP_005436670.1 winged helix family two component transcriptional regulator NC_008702.1.4607594. Protein 2e-48 43
RGE_18300 YP_005436670.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 8e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RGE_18300 YP_005436670.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-29 41
RGE_18300 YP_005436670.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-13 41