Gene Information

Name : istB (RGE_16300)
Accession : YP_005436470.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Unknown
Product : IstB domain-containing protein ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1682523 - 1683323 bp
Length : 801 bp
Strand : +
Note : -

DNA sequence :
ATGGCCGCGTCGAAGAAGACCGAGGAACTCGACGCGCTCGAGCCCATGCTTACGCGGCTCAAGCTCACCGCCATCCGAGA
CCAGCTCGACACGCTGTTGGACCAGGCCGCGCGGGCCGAGCTGAACCTGCGCGAGGCGCTGTCGATGCTGTGCGCGGCCG
AGGTCGCCCGCAAGGACGAGCGGCGCATCCAGATGGGCATGTCCATCGCCAAGTTCCCCTGCGTGCGCACGCTGGAGGGC
TTCGAGTACGACGCGCAGCCGTCGGTGGACCCCAAGCAGATCCGCGAGCTGGCCACCTCGCGCTGGGTTGCCAACGGCGA
CAGCGTGCTGCTGCTCGGGCCGCCCGGCGTCGGCAAGACGCACCTGGCTGTCGCTCTCGGGCGCGAGGCCATCGTGCGCG
GCTACAGCACGCTCTTCGTGCCAGCGACGAGCCTGGTGACGCAGCTGGTGCGGGCGCACGTCGAAGGCCGGCTGGAGGAG
AAGCTCGTGCACTTCGCCAAGCCCAAGCTGCTGGTCGTCGACGAACTCGGCTACCTGCCGTTCGAGGCCAACGCCGCACA
CCTGTTCTTCCAGCTCGTAAGCCGCCGCTACGAGCGCGGCTCGATGCTCGTGACCAGCAACCGCTCGGTGGCCGAGTGGG
GCGGCGTCTTCGGCGACGCCGTCGTCGCCACCGCCATCCTCGACCGGCTGCTGCACCACAGCCACGTCCTCACCATCCGC
GGCGACAGCTACCGGCTGCGGACCAAGCGCCGCTCCGGCCTGGTTAACCAGGCCGGAGCGAACCCCGCAACAACCAACTG
A

Protein sequence :
MAASKKTEELDALEPMLTRLKLTAIRDQLDTLLDQAARAELNLREALSMLCAAEVARKDERRIQMGMSIAKFPCVRTLEG
FEYDAQPSVDPKQIRELATSRWVANGDSVLLLGPPGVGKTHLAVALGREAIVRGYSTLFVPATSLVTQLVRAHVEGRLEE
KLVHFAKPKLLVVDELGYLPFEANAAHLFFQLVSRRYERGSMLVTSNRSVAEWGGVFGDAVVATAILDRLLHHSHVLTIR
GDSYRLRTKRRSGLVNQAGANPATTN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 1e-37 42
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-43 41
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-43 41
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 9e-43 41
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-43 41
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-43 41
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-43 41
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-43 41
unnamed CAA21402.1 - Not tested HPI Protein 2e-43 41
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-43 41
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-43 41
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-43 41
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
istB YP_005436470.1 IstB domain-containing protein ATP-binding protein VFG1460 Protein 8e-38 42
istB YP_005436470.1 IstB domain-containing protein ATP-binding protein VFG1606 Protein 8e-44 41
istB YP_005436470.1 IstB domain-containing protein ATP-binding protein VFG1663 Protein 5e-43 41
istB YP_005436470.1 IstB domain-containing protein ATP-binding protein VFG1515 Protein 8e-44 41
istB YP_005436470.1 IstB domain-containing protein ATP-binding protein VFG1627 Protein 8e-44 41