Gene Information

Name : SELR_27550 (SELR_27550)
Accession : YP_005434486.1
Strain : Selenomonas ruminantium TAM6421
Genome accession: NC_017068
Putative virulence/resistance : Virulence
Product : putative OmpR family two-component system response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2921367 - 2922068 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence :
ATGCAGAAAAAAATATTGCTGGTGGATGATGATTTGAAGCTATTGGATGTTCTGGAGCCATTTCTCCGCAACGAAGGTTT
TGCCACCATGCGGGCCCAGGATGGGCTGGAAGCCCTGACGCTGCTGATGAAGCAGCCAGACCTCATCGTCCTGGACATCA
TGATGCCGCATCTGGATGGCAAGGAAGTCTGCCGCCGCATCCGGCAGATCAGCCAGGTTCCCATCATCATGCTGACCGCA
CTGGACGAGGAAGCCGACAAATTGGAAAGCCTGGATTTAGGCGCCGACGATTACATAGCCAAGCCCTTCAGCATGCGGGA
ACTGGCGGCCAGGATACGGGCCGTCCTGCGGCGGGCCTCAGGCCCCCTTGCCGATACGCCGCCTCAGACGCAAAAACTTG
CCGCAGGCGGCCTTGTGCTGGACAGCCTGCGGCACACGGTGCAGCTGGATGGGAAAATGCTGGAGCTCACCCCTATTGAA
TTTACCCTGTTGGAGGTATTGATGCGTCATCCGGGGCAGGTGCTGAACCGCCTGCAGCTGATGGAGCAGAGCCATGGTTT
TGCTTTTGATGGCTATGAACGTACCATTGATGCCCATATCCGCAACCTGCGCCGCAAGATTGAGCAGGATACCCGCAAGC
CCACCTATATTTTGACCGTGTATGGCGTGGGCTACCGCTTTGGAGGTGACGCTGATGAATAA

Protein sequence :
MQKKILLVDDDLKLLDVLEPFLRNEGFATMRAQDGLEALTLLMKQPDLIVLDIMMPHLDGKEVCRRIRQISQVPIIMLTA
LDEEADKLESLDLGADDYIAKPFSMRELAARIRAVLRRASGPLADTPPQTQKLAAGGLVLDSLRHTVQLDGKMLELTPIE
FTLLEVLMRHPGQVLNRLQLMEQSHGFAFDGYERTIDAHIRNLRRKIEQDTRKPTYILTVYGVGYRFGGDADE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-33 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator HE999704.1.gene2815. Protein 1e-29 46
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator NC_012469.1.7686381. Protein 4e-31 45
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator AF155139.2.orf0.gene Protein 1e-29 44
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP001918.1.gene5135. Protein 4e-22 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP001918.1.gene3444. Protein 1e-30 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP004022.1.gene3215. Protein 2e-23 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP000034.1.gene3834. Protein 4e-22 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP000647.1.gene4257. Protein 4e-22 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator NC_002695.1.915041.p Protein 4e-22 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator BAC0533 Protein 4e-22 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator BAC0083 Protein 2e-25 43
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP000647.1.gene2531. Protein 7e-30 42
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP000034.1.gene3671. Protein 4e-29 42
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator NC_012469.1.7685629. Protein 9e-28 42
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP001138.1.gene4273. Protein 1e-21 42
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP001138.1.gene2239. Protein 4e-30 41
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator CP000034.1.gene2186. Protein 8e-32 41
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator NC_002695.1.916589.p Protein 5e-32 41
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator BAC0596 Protein 4e-30 41
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator BAC0039 Protein 8e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator VFG1563 Protein 1e-33 42
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator VFG1390 Protein 6e-27 41
SELR_27550 YP_005434486.1 putative OmpR family two-component system response regulator VFG1702 Protein 4e-33 41