|
Name : clpC (SELR_16520) Accession : YP_005433383.1 Strain : Selenomonas ruminantium TAM6421 Genome accession: NC_017068 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : - COG ID : - EC number : - Position : 1724306 - 1726804 bp Length : 2499 bp Strand : - Note : - DNA sequence : ATGGATTATCGCAATCATTTTACCAATATGGCCATCAAAGCCATTGAATTTGCCCAATATGCGGCAAGGGATCTGGCACA GGACTATATTGGCACGGAACATATATTGCTGGGGCTTCTCCATGAGCGGGAAGGCCTGGCAGCAAGGGCTATGGGGGCTT TGGGCATGAGCTTTGAGAAAGTCGTGGCCCAGGTGCAGCGCATAGCTTCCCGGGAGGCGGAATATCCCGGGGACAATCCC TATTACACACCCAGAGCCAAGCGGGTGATGGAAGGGGCCTATGAAGAAGCCCAGAACCTGGGGCATAATTATATTGGCAC GGAACACATCCTGCTGAGCCTGCTGGAAGAGACCGAAGGCGCAGCCGTGGAAGTTTTTGAACTGATGGGCATCGACCCGG ATGCCTTGCAGGATGAAGTCATGGACCGCATTGATGGGCAGCATCCCGAAGGCGACGGCCCTCTGCCGGAACACAGGCAT GGCCGTCATCAGCGGGAGGGCACGCCGTTACTCAAAAAATACGGCCGTGACCTCAACAAGATGGCGCGGGAAGAGCAGAT GGACCCGGTGATTGGCCGGAAAACGGAAATCCAGCGGGTGATTCAGATCCTTTCCCGCCGTACGAAAAATAATCCCGTGC TCCTGGGCGAGCCGGGCGTAGGCAAGACGGCCATTGCCGAAGGACTGGCCCAGCGCATCGTGGATGGCATGGTGCCCTAT ATGCTGCAGGATAAGAAAGTTATTTCTCTGTCCATGGCTTCGCTGGTAGCTGGGGCCAAATACCGCGGGGAATTCGAAGA ACGCCTGAAGGGCGTGATCGAAGAAATCCAGCAGGCGGGCAATATCATCCTCTTTATCGATGAAATGCATACCTTAGTCG GTGCCGGTGCTGGAGAAGGTGCCTTGGATGCTGCCAATATCCTGAAACCGGCCCTGTCCCGGGGTGAGATCCAGATCATC GGTGCCACAACACTGGATGAGTATAAGAAGTATCTGGAAAAGGACGCAGCCCTGTCCCGCCGTTTCCAGCCCATTATGGT GGAGGAACCGGATGCAGAGGATGCGGAGAAGATCCTTTTTGGGCTGCGCAGCAAGTATGAAGAATTCCATCATGCCACCA TTGAGGACGAGGCGGTCAAAGCCGCCGTGCGGCTGTCCCATCGCTATATCAGTGACAGGTTCCTGCCGGACAAGGCCATT GACCTGATGGACGAAGCGGCCTCCAAGGTGCGCATGAGCCAGGTGGGGTCAACTGCCAGATTGCAGGAACTGCGCGATCG GCTGCAGCAGCTGCTGATTGAGAAGGAAGCTGCCATCACGGCCCAGGATTATGAGAAGGCGGCCAATATCCGGGATAAAG CCTTGAAGATCAAGGAAGAGCTGGATGAAACCCGCAAGGATTGGTCGAAGAAGGGGCAGAATCATATCACGGTAACGGCT GAGGATATTGCTGCCGTGACTTCGCAATGGACAGGTATTCCCGTGAGCCAGATTGCGGCTTCTGAATCAGCGCGTCTGCT GAAATTGGAAAAGATCCTTGGCAAGCGTGTCATTGGTCAGACCGATGCCGTAAAGGCTGTGGCCAAGGCTATCCGCCGTG CCCGTTCGGGACTCAAGGATCCCAAACGGCCCATTGGGTCCTTCCTGTTCCTGGGGCCTACCGGTGTGGGCAAGACCGAG CTGGCCCGCACTTTGGCTGATGCGCTGTTCGGTTCGGAAGAAGCCATTATCCGCTTCGATATGAGCGAGTATATGGAAAA ACACACCGTTTCCCGCATGGTGGGAGCCCCTCCGGGCTATGTGGGCTATCAGGAAGGCGGCCAGCTGACCGATGCGGTAC GTCGCAAGCCTTATTCGATTATCTTGCTGGATGAAATCGAAAAAGCCCATCCCGATGTGTTCAATATCCTGCTGCAGGTT TTGGACGATGGCCGCCTGACCGATGGCCAGGGGCGTACGGTGGATTTCCGCAACAGCGTGATCATCATGACTTCCAATGC CGGTTCGAATCTCTTGAAGAAGGCCAAAAGCTCCATGGGCTTTGCCGTGGGCAATGGGGACGAGGAGGAAGCCGCGGAAA AAGCCGCTGAGAAGCGTGTGCTTGAAGCTGTGAAGCATATCTTCAAACCGGAGTTTTTGAACCGCGTGGATGAGCAGCTG ATCTTCCATCCCTTGGGACGTCCGGAGCTGGCGAAAATTGTGGATATTTTGTTGCAGGATGTGAAACAGCGTCTGCAGGA AAAGGATATCCGGTTGGAAATCAGCCCCTCGGCGCGCAATAAGCTGGTGGATGAAGGCACGGATTTCAAATTCGGTGCCC GTCCGTTGAAGCGTGCCATCCAGAAGCATGTGGAAGACGAGATTGCCGAGATGCTGCTGGCAGGCAAGTTCAAGGCCGGC GATACCATCGTTGTGCGCAAGAGCGGCAATGAATTGGAATTCACGAAAAAAGCCAAGCGGTCTGTAAAGCGCAAGGAGCT GGAACATGTCCCGCAATAA Protein sequence : MDYRNHFTNMAIKAIEFAQYAARDLAQDYIGTEHILLGLLHEREGLAARAMGALGMSFEKVVAQVQRIASREAEYPGDNP YYTPRAKRVMEGAYEEAQNLGHNYIGTEHILLSLLEETEGAAVEVFELMGIDPDALQDEVMDRIDGQHPEGDGPLPEHRH GRHQREGTPLLKKYGRDLNKMAREEQMDPVIGRKTEIQRVIQILSRRTKNNPVLLGEPGVGKTAIAEGLAQRIVDGMVPY MLQDKKVISLSMASLVAGAKYRGEFEERLKGVIEEIQQAGNIILFIDEMHTLVGAGAGEGALDAANILKPALSRGEIQII GATTLDEYKKYLEKDAALSRRFQPIMVEEPDAEDAEKILFGLRSKYEEFHHATIEDEAVKAAVRLSHRYISDRFLPDKAI DLMDEAASKVRMSQVGSTARLQELRDRLQQLLIEKEAAITAQDYEKAANIRDKALKIKEELDETRKDWSKKGQNHITVTA EDIAAVTSQWTGIPVSQIAASESARLLKLEKILGKRVIGQTDAVKAVAKAIRRARSGLKDPKRPIGSFLFLGPTGVGKTE LARTLADALFGSEEAIIRFDMSEYMEKHTVSRMVGAPPGYVGYQEGGQLTDAVRRKPYSIILLDEIEKAHPDVFNILLQV LDDGRLTDGQGRTVDFRNSVIIMTSNAGSNLLKKAKSSMGFAVGNGDEEEAAEKAAEKRVLEAVKHIFKPEFLNRVDEQL IFHPLGRPELAKIVDILLQDVKQRLQEKDIRLEISPSARNKLVDEGTDFKFGARPLKRAIQKHVEDEIAEMLLAGKFKAG DTIVVRKSGNELEFTKKAKRSVKRKELEHVPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 6e-179 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_005433383.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_005433383.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 3e-149 | 52 |
