Gene Information

Name : pilR (MARHY0745)
Accession : YP_005428658.1
Strain : Marinobacter hydrocarbonoclasticus ATCC 49840
Genome accession: NC_017067
Putative virulence/resistance : Virulence
Product : fimbrial regulatory protein PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 782277 - 783695 bp
Length : 1419 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; Product type r : regulator

DNA sequence : 
TTGAATTCAACAGGGAACCGAAGACACAGAATGACTACACAGACAGCGCTGATTGTTGACGACGAGCCGGATATCCGGGA
TCTACTGGAAATCACCCTCACCCGGATGGGCATTACCACCTACACTGCCCCCGATCTGGCCAGCGCCAGGGAATTGCTGC
AGCAGCACAACCCCCAGCTCTGCCTGACCGACATGAACCTGCCCGACGGCAATGGCATAGAGCTTGTTCACTGGATCCAG
CAACACACTCCCTGCACCCCCGTTGCAGTGATCACCGCCTATGGCAGCATGGATACGGCTATCGAATCGCTCAAAGCCGG
CGCTTTTGACTTCGTATCCAAGCCCGTGGAGCTGCCCCGCCTGCGGGAACTGGTCAACAGCGCTCTGAAGCTGTCAGAAC
CCCAGACCCGCGGAACCGCTGATTCCGATGAGCCTGGCCTGCTTCTGGGCGACTCGCCGCAAATCCGGAAACTGCGCACA
CAGACGAAAAAGCTCGCCAGAAGCCAGGCACCGGTGTTTATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTCGCCCG
CATGATTCACCTGCAAGGCCCCAGAAGTGACGGCCCCTTTATCGCAGTGAACTGTGGCGCAATCCCCTCGGAATTGATGG
AAAGCGAGTTCTTTGGCCACAAGAAGGGCAGCTTCACCGGAGCCGTCGAGAACAAGCAGGGCCTGTTCCGCTCTGCCGAT
GGTGGCACCCTGTTTCTGGACGAAGTGGCCGACCTGCCACTGGCCATGCAGGTAAAACTGCTGCGTGCTATCCAGGAGAA
AGCCGTCCGCCCGGTCGGCGATACCAAAGAAGTGCCAGTGGACATCCGGGTGCTCAGCGCCACCCACAAAAACCTCCCGG
AACTGGTGCAGGAAGGCGACTTCCGCCAGGATCTGTTCTACCGGATCAACGTCATCGAACTGGCGGTTCCACCGCTGCGC
GAACGCGCCGAGGATATTCCCCTGCTGGCCGAGCACATTCTCCAACGCATAGCGCGGGAATACGAGTGCGACCCGGCCAA
ACTCACCGCGGCCGCCATCGAACGACTCAAAGGCTACGAGTTTCCCGGTAACGTTCGTGAACTGGAGAACATCCTGGAAC
GCGCTTTTACCCTGTGCGATGAAGACCTGATTGATGCCGGAGATCTGCATCTTGGCGGCGGTGTCGTGCCAGCGGGCTCG
GCCTCCGCGTCCAGAGAGACGGAGTCAGAAACGGATGCTGCCGCAGCTCCGGTGCCCGAGGGTGAGATCGATCTTGAGGG
CTATCTGGAAAGCATTGAGCGCCAGGCTATTGAAAAGGCTCTGGAGGCAACAAGGTGGAATAAAACGGCCGCGGCCAAGC
GCTTAGGGATCAGTTTTCGGGCGTTGAGGTATCGATTAAAGAAACTGGGGATGGAGTAA

Protein sequence : 
MNSTGNRRHRMTTQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLASARELLQQHNPQLCLTDMNLPDGNGIELVHWIQ
QHTPCTPVAVITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPQTRGTADSDEPGLLLGDSPQIRKLRT
QTKKLARSQAPVFISGESGSGKELVARMIHLQGPRSDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKQGLFRSAD
GGTLFLDEVADLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGDFRQDLFYRINVIELAVPPLR
ERAEDIPLLAEHILQRIAREYECDPAKLTAAAIERLKGYEFPGNVRELENILERAFTLCDEDLIDAGDLHLGGGVVPAGS
ASASRETESETDAAAAPVPEGEIDLEGYLESIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-113 54
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-113 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_005428658.1 fimbrial regulatory protein PilR BAC0089 Protein 1e-70 44
pilR YP_005428658.1 fimbrial regulatory protein PilR BAC0467 Protein 4e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_005428658.1 fimbrial regulatory protein PilR VFG1214 Protein 3e-140 64
pilR YP_005428658.1 fimbrial regulatory protein PilR VFG1248 Protein 9e-56 42