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Name : smpB (MARHY3213) Accession : YP_005431091.1 Strain : Marinobacter hydrocarbonoclasticus ATCC 49840 Genome accession: NC_017067 Putative virulence/resistance : Unknown Product : trans-translation protein, binds tmRNA (SsrA) and promotes association with ribosomes Function : - COG functional category : - COG ID : - EC number : - Position : 3300185 - 3300667 bp Length : 483 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10393194; Product type f : factor DNA sequence : ATGAGCAAGAAGAAAGCAAACGCCCCAACCAGCAACACCATCGCCCTGAACAAGAAGGCGAAGCACGAATACCATATTGA GGAGCGCTTCGAGGCTGGCCTGGCCCTGCTTGGCTGGGAAGTGAAGTCGTTGCGTGCCGGTAAGGCACAACTGGTTGACG CCTATGTACTGCTGAAGGATGGCGAAGCCTGGCTGTTGGGCTCCCACATCACGCCTCTGAACACCGCCTCTACCCATGTG ATTGCGGACCCGACCCGCACCCGCAAACTGCTGCTGCACGCCAAGGAAATCGCCAAGATTGTCGGCCAGGTAAATCAGGC GGGTTACACCTGCATTCCCCTCGCCCTGTACTGGAAAAAGAACAAGGTAAAATGCGAGATCGCCCTGGTGAAAGGCAAGA AGCTGTTCGACAAGCGCGCTACGGAGAAAGAACGCGACTGGAACCGCCAGAAACAGCGCATCATGCGCGAGGCCAACACC TGA Protein sequence : MSKKKANAPTSNTIALNKKAKHEYHIEERFEAGLALLGWEVKSLRAGKAQLVDAYVLLKDGEAWLLGSHITPLNTASTHV IADPTRTRKLLLHAKEIAKIVGQVNQAGYTCIPLALYWKKNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRIMREANT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-39 | 57 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-26 | 46 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-24 | 43 |
