Gene Information

Name : ybbA (MARHY2234)
Accession : YP_005430131.1
Strain : Marinobacter hydrocarbonoclasticus ATCC 49840
Genome accession: NC_017067
Putative virulence/resistance : Resistance
Product : ABC transporter subunit ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2278626 - 2279354 bp
Length : 729 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter

DNA sequence :
GTGAACCAGATGACGGATCTCAGTAATACCGATAGCAACCTTATGTTGCGGGTGACTGATCTGACCCATCGGGTCAGCCT
GGAAACCGATACGCTCACGATCTTGCAGGGGGTCAGTCTGGAAATCAATCGGGGAGAGTCCGTAGCCATCGTTGGTCGCT
CCGGTTCCGGCAAAACGACTTTGCTTGGCTTGCTTGCGGGCCTGGATACACCCACGGAAGGCACCGTTGAACTGGATGGT
GCGGTCATCAGCAAGCTGAGTGAAGATGAGCGTGCCAAGCTCCGGGCCCGTCGGGTCGGGTTTGTGTTCCAGTCGTTCCA
GTTGCTGCCGGCGTTGACCGCGCTGGAAAATGTGATGCTGCCGCTGGAACTGGGCGGCACGGAGGCACCGGAGCAGCGGG
CCAGAGAATTGCTTGATCGGGTAGGTTTGGGGGAGCGGCTGAACCATACCCCTCGTCAGTTGTCCGGTGGCGAGCAGCAG
CGGGTCGCGATTGCGCGTGCCTTTGCATCCGACCCCGCCATTCTGTTTGCCGATGAGCCGACGGGCAATCTGGATAACCG
GACCGGGCAGGCGGTGTCTGACCTGCTGATGGATCTGAACCGGGAGCAGGGCACCACACTGGTGATGGTTACCCATGATG
AACACCTTGCCGAACGTTGCGGCCGGCAGCTGCACATCGAGGCGGGCATGCTGACTGAGCCGGATCTGGCCGGGGAGCCG
GCACACTGA

Protein sequence :
MNQMTDLSNTDSNLMLRVTDLTHRVSLETDTLTILQGVSLEINRGESVAIVGRSGSGKTTLLGLLAGLDTPTEGTVELDG
AVISKLSEDERAKLRARRVGFVFQSFQLLPALTALENVMLPLELGGTEAPEQRARELLDRVGLGERLNHTPRQLSGGEQQ
RVAIARAFASDPAILFADEPTGNLDNRTGQAVSDLLMDLNREQGTTLVMVTHDEHLAERCGRQLHIEAGMLTEPDLAGEP
AH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-23 47
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-26 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-26 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_005430131.1 ABC transporter subunit ATP-binding protein NC_008702.1.4606598. Protein 6e-35 53
ybbA YP_005430131.1 ABC transporter subunit ATP-binding protein NC_012469.1.7686878. Protein 2e-35 49
ybbA YP_005430131.1 ABC transporter subunit ATP-binding protein NC_012469.1.7685735. Protein 4e-29 46
ybbA YP_005430131.1 ABC transporter subunit ATP-binding protein CP001581.1.gene598.p Protein 2e-30 42