Gene Information

Name : HPELS_03985 (HPELS_03985)
Accession : YP_005424917.1
Strain : Helicobacter pylori ELS37
Genome accession: NC_017063
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 814219 - 815826 bp
Length : 1608 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATATTAAAAGGACTTTTTTAATAACGATCATGAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGCTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAACACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGATGTGTCCATGGATAGCGTGCTAGACAATTTGAGCAACAAGATTCAGAATTTCACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATATTCTTTTACAAATAATTGGCTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGTAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCATTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTGATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAATGGTATTCAGATTAACATAGGTTTTGAATACATGCGATTTATTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGCGCTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGTAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTA
TTTCTTTATTCGCCATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTGGTTGTGAAACCTTTGATAGCTGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTGTGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTGGGTATCGATTCAACTATTGCGAGT
TTGATCACTCTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAG
CTCTGTCTCTATGGATGGCAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTAGGAAGAGTTAGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNIKRTFLITIMSFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSVLDNLSNKIQNFTK
GGVEDNVKGNILLQIIGSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESVVKGADAAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFIGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGRVSGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 99
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 99
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 99
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 99
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 99
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 99
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPELS_03985 YP_005424917.1 cag island protein VFG0289 Protein 0.0 99