Gene Information

Name : HPELS_03970 (HPELS_03970)
Accession : YP_005424914.1
Strain : Helicobacter pylori ELS37
Genome accession: NC_017063
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag6)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 806282 - 806881 bp
Length : 600 bp
Strand : -
Note : -

DNA sequence : 
ATGGAACTCGGTTTTAATGAAGCAGAAAGACAAAAGATCTTAGATAGCAATAGTTCTCTTATGAGAAATGCGAATGAAGT
AAGGGATAAGTTTATTCAAAATTACGCCACTTCTTTAAAAGATAGCAACGATCCGCAAGATTTTTTGAGAAGAGTTCAAG
AGTTAAGAATCAATATGCAAAAGAATTTTATTAGTTTTGATACTTATTACAACTATTTAAACAACCTTGTGTTAGCCAGT
TACAATCGTTGCAAACAAGAAAAGACTTTTGCAGAAAGCACGATCAAAAATGAACTAACGCTTGGGGAGTTTGTTGCAGA
AATTTCTGACAACTTCAATAATTTCATGTGTGATGAAGTGGCAAGAATTTCAGACCTAGTGGCTTCTTATCTGCCAAGAG
AGTATTTACCGCCATTCATAGATGGCAATATGATGGGCGTGGCGTTTCAGATTCTAGGGATAGATGATTTTGGGAAAAAG
CTCAATGAGATTGTCCAAGATATAGGGACTAAATATATTATTTTGAGCAAAAATAAGACTTATCTCACTTCTTTAGAAAG
GGCTAAATTGATAACCCAGTTAAAATTAAATTTGGAATAA

Protein sequence : 
MELGFNEAERQKILDSNSSLMRNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRINMQKNFISFDTYYNYLNNLVLAS
YNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGKK
LNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLNLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0526 BAD13887.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-87 99
orf12 NP_223193.1 cag island protein Virulence cag PAI Protein 1e-86 99
cag-Z AAF80197.1 Cag-Z Virulence cag PAI Protein 5e-87 99
HP0526 BAD13914.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-87 99
HP0526 BAD13859.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-86 98
HP0526 BAD13997.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-86 98
cag6 AAR03860.1 Cag6 Virulence cag PAI Protein 6e-86 98
HP0526 BAD13969.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-86 98
cagZ YP_003728738.1 cag pathogenicity island protein Z Virulence cag PAI Protein 1e-85 98
HP0526 BAD13778.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-86 98
cagZ YP_005775729.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 98
cagZ YP_005779064.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-86 98
HP0526 NP_207322.1 cag pathogenicity island protein (cag6) Virulence cag PAI Protein 5e-86 98
cag6 AAR03889.1 Cag6 Virulence cag PAI Protein 3e-85 97
HP0526 BAD13805.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-86 97
HP0526 BAD13942.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 97
HP0526 BAD14051.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 97
cagZ YP_005777270.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 97
HP0526 BAD14025.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 97
HP0526 BAD13832.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 97
cag6 AAR03918.1 Cag6 Virulence cag PAI Protein 8e-86 97
cag6 AAR03949.1 Cag6 Virulence cag PAI Protein 8e-86 97
cagZ YP_005774543.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-84 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPELS_03970 YP_005424914.1 cag pathogenicity island protein (cag6) VFG0286 Protein 1e-86 98