Gene Information

Name : HPELS_03945 (HPELS_03945)
Accession : YP_005424909.1
Strain : Helicobacter pylori ELS37
Genome accession: NC_017063
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Delta
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 800592 - 802037 bp
Length : 1446 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAGAAAACTAGCAACCTCTGTATCGCTCATAGGCTTACTAATCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC
AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCACTGTTTGATATA
TACGACACCTTGAATGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTATTGGATTACAACAACTATTTATCCATAGAAAACCCCATTATCAAAACAAGAGCAATGGGGACTTATG
CGGATCTCATCATCATCACAGGTTCGTTAGAACAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGAAAC
GCTAAGTTTGTGTTAAAAATCAATGAGAACATGCCTTATGCCCAAGCGACTTTTTTAAGAGTGCCAAAAAGAAGCGATCC
CAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAGAATAAGCTTTTTGAACAACAAAAACGCGCGTATTTCAACT
ACGCCAACGATGTGATCTGCAGACCTAATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTAGCTATGCCTAGTAAC
GATAGCGTTATTCAAAAACCCAATATCGTTGCTCCTTATAGCTTGTATAGACTCAAAGAGACAAATAACGCCAATGAGGC
CCAACCATCACCTTATGCCACCCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC
AACTCATAGCCAATGAGGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC
AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAACGCTAAGAAACCTAG
AGTAGTGGAAGTGCCTGTTTCTCCTCAAACAAGTAATTCTGATGAAACAATGAGAGTTGTCAAAGAAAAAGAGAACTATA
ATGGGTTATTAGTGGATAAGGAGACCACGATCAAAAGAAGCTATGAGGGGACTTTGATCAGTGAAAATTCTTACAGCAAA
AAAACGCCTCTCAACCCTAATGACTTGAGGAACTTAGAAGAAGAAATCAAAAGCTACTACATCAAGTCTAACGGCTTGTG
TTACGCTAATGGCATTAGCCTCTATGCAAAAATCAAAAACGACCCCTATAAAGAGGGAATGCTGTGTGGTTATGAGAGTG
TTCAAAATCTGCTCTCACCTCTAAAGGACAAGCTCAAATACGACAAGCAGAAGTTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence : 
MFRKLATSVSLIGLLISNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDHKKPQYASVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINENMPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPSN
DSVIQKPNIVAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPVSPQTSNSDETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSK
KTPLNPNDLRNLEEEIKSYYIKSNGLCYANGISLYAKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 8e-168 98
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 2e-168 98
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 3e-168 98
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-166 98
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 98
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 1e-167 97
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 2e-168 97
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 2e-168 97
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-167 97
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-167 97
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-167 97
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 1e-167 97
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-167 97
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-166 97
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 6e-166 97
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-166 96
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-166 96
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-167 96
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-165 96
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-165 96
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 96
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 96
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 96
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 4e-163 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPELS_03945 YP_005424909.1 cag pathogenicity island protein Delta VFG0282 Protein 6e-168 97