Gene Information

Name : ydfA (BANAU_3768)
Accession : YP_005423105.1
Strain : Bacillus amyloliquefaciens YAU B9601-Y2
Genome accession: NC_017061
Putative virulence/resistance : Resistance
Product : Arsenical pump membrane protein Arsenic efflux pump protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3997971 - 3999269 bp
Length : 1299 bp
Strand : +
Note : -

DNA sequence : 
TTGGGAGTTGCGGTTTTATCAGCGCTGATTTTTGTGCTGACACTTGTGTTTGTCATATGGCAGCCGAAACATGTATCAAT
CGGCTGGTCTGCCTGCGGCGGAGCGGTCCTCGCTTTGATCGCCGGAGCAGTCAGCCTGCACGATATCGCGGAAGTGACGG
GAATCGTCTGGAATGCGACACTTGCCTTTATCGCCATTATTATCATTTCATTGATTCTTGACAGCATCGGTTTTTTTGAG
TGGGCCGCGCTGCATATGGCCATGGCGGCCAAAGGCAGCGGGCTGCGGATGTTTCTCTATGTGTCGGTCTTAGGGGCTGT
TGTCTCCGCCCTGTTTGCCAATGACGGAGCGGCGCTCATTTTGACGCCGATCGTACTGGCGATGGTGCGGGCTTTGAATT
TACCTGAAAAGCTGGTTTTTCCGTTTATTATCGCCGGAGGATTCATCGCCGACACCACCTCTCTTCCGCTCGTTGTAAGC
AATTTGGTCAATATTGTATCCGCCGATTACTTTCATATCGGGTACATTGAATATGCATCACGCATGCTGGTGCCCAACCT
TTTTTCTCTGGCGGCAAGCATTTTGGTGCTGTATCTCTATTTCAGAAAAAACATTCCGAAACGGTATGACACCGGTCTTG
TGAAACATCCGGCATCCGCGATTAAGGATGAACGCCTTTTCCGGTTATCATGGGGTGTCCTGGCCGTTTTATTGATTGGG
TATTTCGTCAGTGCGCTGCTGTCGATCCCCGTTTCCTTCGTTGCCGGCTCCATCGCGGTTATTTTTCTCATTCTGGCGCA
GCGAAGCCCCGCCGTCCCTGCGAAACAAGTCATCAAGGACGCCCCGTGGGCCATCGTGTTTTTTTCTGTCGGCATGTATG
TTGTCGTGTACGGCTTGCGGAATGCCGGACTGACGGATCTTCTTTCTCAGCTTATTCAGAAAGCGGCGGATCACGGACTG
TTTGCGGGCACACTCGGAATGGGTTTTATCGCTGCGATCCTGTCCTCCGTTATGAATAACCTGCCGACGGTGATGATTGA
CGCCATAGCCATCAGCGGAACGGACACTCACGGGCTGATGAGAGAAGCATTGATTTACGCGAATGTTATCGGTTCGGACC
TTGGGCCGAAAATCACGCCGATCGGATCGCTGGCGACATTGTTATGGCTCCACGTGCTGAGCCGGAAAAACGTGAAAATT
TCCTGGGGAATGTATTTCAAGACAGGTCTGATATTAACCATTCCGACGTTATTCATCACCCTGATCGGACTTTATTTATG
GCTGTTATGGCTCGCTTGA

Protein sequence : 
MGVAVLSALIFVLTLVFVIWQPKHVSIGWSACGGAVLALIAGAVSLHDIAEVTGIVWNATLAFIAIIIISLILDSIGFFE
WAALHMAMAAKGSGLRMFLYVSVLGAVVSALFANDGAALILTPIVLAMVRALNLPEKLVFPFIIAGGFIADTTSLPLVVS
NLVNIVSADYFHIGYIEYASRMLVPNLFSLAASILVLYLYFRKNIPKRYDTGLVKHPASAIKDERLFRLSWGVLAVLLIG
YFVSALLSIPVSFVAGSIAVIFLILAQRSPAVPAKQVIKDAPWAIVFFSVGMYVVVYGLRNAGLTDLLSQLIQKAADHGL
FAGTLGMGFIAAILSSVMNNLPTVMIDAIAISGTDTHGLMREALIYANVIGSDLGPKITPIGSLATLLWLHVLSRKNVKI
SWGMYFKTGLILTIPTLFITLIGLYLWLLWLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 4e-116 67
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 2e-111 66
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-118 66
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 6e-94 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ydfA YP_005423105.1 Arsenical pump membrane protein Arsenic efflux pump protein BAC0574 Protein 3e-115 67
ydfA YP_005423105.1 Arsenical pump membrane protein Arsenic efflux pump protein BAC0575 Protein 3e-118 66
ydfA YP_005423105.1 Arsenical pump membrane protein Arsenic efflux pump protein BAC0578 Protein 3e-94 60
ydfA YP_005423105.1 Arsenical pump membrane protein Arsenic efflux pump protein BAC0576 Protein 1e-93 59
ydfA YP_005423105.1 Arsenical pump membrane protein Arsenic efflux pump protein BAC0577 Protein 2e-94 58
ydfA YP_005423105.1 Arsenical pump membrane protein Arsenic efflux pump protein BAC0031 Protein 1e-89 57