Gene Information

Name : Q7S_25271 (Q7S_25271)
Accession : YP_005419308.1
Strain :
Genome accession: NC_017060
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 533851 - 534705 bp
Length : 855 bp
Strand : +
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGATGTCCTGGTTTGATGTGCTGATGGAGCCGCTGAGCTTCGATTTTATGCAACGTGCTCTGCTGACCGCTGCGGCCAC
CAGTATCGTCTGCGCAATGTTTTCCTGTTTTCTGGTACTCAAAGGCTGGTCGCTGATGGGGGACGCCATTTCTCATGCGG
TCCTTCCGGGCGTAGTGCTGGCCTATCTGGCAGGAATTCCGCTGGTGATTGGCGCGTTCGGTTCCGGCCTGTTTTGCGCG
GTCGCGACGGGTTTCATCAAAGAACATTGCCGGGTGAAAGAAGATTCGGTAATGGGGATCGTCTTCTCCGGTATGTTTGC
CGGTGGTCTGGTGCTGTTCTCGCGGGTGAATACCGAGCAGCATCTCAGCCACATTTTGTTTGGTAACGTGCTGGGTGTGA
CCGACAGTGAAATGTTGCAAACCCTGATTATCGCCGCTGTCGTGACGCTGGCGATTATCCTCAAATTTAAAGACCTGATG
CTGTTTTGTTTTGATCCTGTACAGGCGAAAGTCATCGGGCTGCCGGTACGTTTTTATCACTATGCGTTGTTGTGTATGCT
GGCACTGACCATTGTCGCAGCGTTACAGGCTGTCGGTGTGGTGCTGGTGGTGGCGATGCTGATTACGCCGGGCATTACGG
CGTTTCTGCTGTGTAAGACGTTGACGAAGATGCTGGTGGTTTCCGTGACAACGTCACTTTTTGCGGCCATCTCAGGCACT
TTTATCAGCTTCTATATTGATGCTGCGACTGGGCCGACAATCGTTCTGGTGCAGGCGGCCATTTTCCTGCTGGCGCTGAC
GGCGAATTTACTGCGCAAATCGATTAAGCCGCGTCAGGCCGCACCGAATACTTAG

Protein sequence : 
MMSWFDVLMEPLSFDFMQRALLTAAATSIVCAMFSCFLVLKGWSLMGDAISHAVLPGVVLAYLAGIPLVIGAFGSGLFCA
VATGFIKEHCRVKEDSVMGIVFSGMFAGGLVLFSRVNTEQHLSHILFGNVLGVTDSEMLQTLIIAAVVTLAIILKFKDLM
LFCFDPVQAKVIGLPVRFYHYALLCMLALTIVAALQAVGVVLVVAMLITPGITAFLLCKTLTKMLVVSVTTSLFAAISGT
FISFYIDAATGPTIVLVQAAIFLLALTANLLRKSIKPRQAAPNT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-61 55
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-61 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-61 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-61 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-61 52
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-40 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 3e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7S_25271 YP_005419308.1 ABC transporter BAC0442 Protein 9e-74 65
Q7S_25271 YP_005419308.1 ABC transporter BAC0352 Protein 1e-61 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7S_25271 YP_005419308.1 ABC transporter VFG0528 Protein 9e-62 52