Gene Information

Name : RSPPHO_02082 (RSPPHO_02082)
Accession : YP_005417678.1
Strain : Rhodospirillum photometricum DSM 122
Genome accession: NC_017059
Putative virulence/resistance : Virulence
Product : Two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2479537 - 2480196 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence :
ATGCGGGTTTTGGTCGTCGAGGATGAACCGACCCTGGCCGCTTCCCTGGCCCGGGTGCTGGAACGCGCCGGCTTTGTGGT
CGATGTCGCGCCCGATGGGGAAGAGGGGCACTTTCTCGGCGATACCGAGCCCTATGACGCCGTGGTTCTCGACCTTGGCC
TGCCCCGCCTCGACGGGGTCGGCGTGCTGCGGCGCTGGCGGGCCGACGGGCGGAGCATGCCTGTCCTGATCCTTACGGCG
CGTGGCGGCTGGGCGGAGAAAGTGGCGGGGTTCGAGGCCGGCGCCGATGATTTTCTGGCCAAGCCCTTCGAGATGGAGGA
GGTGATCTATCGCCTGAAGGCCCTGATTCGGCGGGCCAGCGGCCATGGCGCCACCACCTTGACCGTGGGTCCGCTGCGCT
ACGACACCTTGTCGGGCAAGGCCTGGGTGGACGGGGTGCCCTTGGATCTGACGGCCCAGGAGGGGCGCATCCTTTCTTAC
CTATTGCACCACGCCGGTCGGCCGGTGAGCCGCACCGAGATCATCGAACACGTTTACGATCGGGATTTCGATAGTGATTC
CAACGTGATCGACGTCCTGATCGGGCGCCTGCGCCGCAAGCTCGGGGCGCCCCTGATCCACACCGTGCGCGGTCTGGGCT
ACTGTCTGGAGGCCCGATGA

Protein sequence :
MRVLVVEDEPTLAASLARVLERAGFVVDVAPDGEEGHFLGDTEPYDAVVLDLGLPRLDGVGVLRRWRADGRSMPVLILTA
RGGWAEKVAGFEAGADDFLAKPFEMEEVIYRLKALIRRASGHGATTLTVGPLRYDTLSGKAWVDGVPLDLTAQEGRILSY
LLHHAGRPVSRTEIIEHVYDRDFDSDSNVIDVLIGRLRRKLGAPLIHTVRGLGYCLEAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-26 41
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-32 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 4e-40 48
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family CP000647.1.gene1136. Protein 2e-34 43
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family BAC0083 Protein 3e-33 43
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family BAC0197 Protein 4e-31 43
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family BAC0530 Protein 2e-34 43
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family CP001918.1.gene2526. Protein 2e-33 42
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family CP001138.1.gene1939. Protein 2e-34 42
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family BAC0125 Protein 7e-35 42
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family BAC0638 Protein 1e-27 42
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family NC_002695.1.913289.p Protein 1e-32 41
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family CP000034.1.gene2022. Protein 8e-34 41
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family BAC0111 Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family VFG1389 Protein 4e-32 46
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family VFG0475 Protein 2e-34 42
RSPPHO_02082 YP_005417678.1 Two component transcriptional regulator, winged helix family VFG0596 Protein 3e-26 41