Gene Information

Name : Q7S_02365 (Q7S_02365)
Accession : YP_005400305.1
Strain : Rahnella aquatilis HX2
Genome accession: NC_017047
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 510597 - 511259 bp
Length : 663 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAACTGCTGATAGTTGAAGATGATGAACTTTTACGGCAGGGATTAACGCTGGCACTTACCAGTGAAAATTATGCCTG
CGACTGCGCGTCAACCGCGGCCGAGGCGCAGAGTCTGATCCAAACCAGTCAGTACAGTCTGGTGATCCTGGATTTAGGAT
TGCCAGACAAAGATGGCGCAACGCTGCTGCGCCAGTGGCGGCGTCAAAGTATTTCCCTGCCCGTGTTGATTCTTACCGCC
CGCGATGCACTTGAAGACCGCGTCGATGGCCTTGACGCCGGTGCCGATGACTATCTGATTAAACCCTTTGCCTTAGTCGA
ATTACAGGCTCGTGTCCGCGCCCTGATCCGCCGTTATCAGGGGCAGAGTGACAACCAGATTTCCGTCGGCAACCTGAAAA
TCAATCTCTCCTCTCAGCAGGCTTATCTCAATGATGCGCCGGTAGAGGTCACGCCCAAAGAGTTCGCGATTTTGTCACGA
CTGATGATGCGTGCCGGGCAGACTGTAAACCGCGAGTTGCTCCAGCAAGATCTCTATACCTGGCAGGATGATTTAGGCTC
CAATACGCTTGAGGTACATGTTCATAATCTGCGCCGCAAATTGGGTAAAGAAGTCATCAGAACTGTACGTGGTATCGGCT
ACAGGCTGGAAATAATCGTATGA

Protein sequence : 
MKLLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGLPDKDGATLLRQWRRQSISLPVLILTA
RDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQGQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSR
LMMRAGQTVNRELLQQDLYTWQDDLGSNTLEVHVHNLRRKLGKEVIRTVRGIGYRLEIIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-29 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7S_02365 YP_005400305.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 3e-64 66
Q7S_02365 YP_005400305.1 DNA-binding transcriptional regulator BasR NC_002516.2.879194.p Protein 3e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7S_02365 YP_005400305.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 5e-59 57
Q7S_02365 YP_005400305.1 DNA-binding transcriptional regulator BasR VFG0596 Protein 2e-29 41