Gene Information

Name : Q7S_13345 (Q7S_13345)
Accession : YP_005402455.1
Strain : Rahnella aquatilis HX2
Genome accession: NC_017047
Putative virulence/resistance : Unknown
Product : alpha amylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2946374 - 2948032 bp
Length : 1659 bp
Strand : -
Note : COG0366 Glycosidases

DNA sequence :
ATGGCAAACTGGTGGAAAGAGGCCGTGGCGTATCAGATCTATCCACGCAGCTTCAAAGACAGCAACCGCGATGGTATTGG
CGATATTAACGGCATAACTGAAAAACTCGATTATCTTAAGGATCTGGGGATCGATCTGATCTGGATCTGTCCGATATATC
AGTCACCCAACGACGACAACGGCTACGACATCAGCGATTACCAGCAAATCATGGCAGAATTCGGCACGATGGCCGATTTT
GACCACCTGCTGAAGCAGGTTCATCTGCGCGGGATGCGGTTGATTATTGATTTGGTCGTTAATCATACTTCTGATGAACA
TCCCTGGTTTGTGGAGTCGGGTTCCTCCCTCGATAATCCGAAACGCGACTGGTACATCTGGCGCGACGGTAAACAGGGTG
GGGAGCCGAATAACTGGGAGAGCATTTTTAACGGGTCCGCCTGGAAGCATAGCGCGGCCACCGGGCAGTACTTTTTACAT
CTGTTTTCTGAAAGGCAGCCGGATCTCAACTGGGAGAACCCCGGGGTGCGCTCGGCCATTTACACCATGATGCGCTGGTG
GCTTGATAAAGGCGTGGACGGCTTCCGAATTGATGCTATCTGCCATATGAAAAAAGAGCCAGCATTCAGTGACATGCCTA
ATCCGCAGGGACTCCCTTATGTGCCGTCGTTCGAACGCCATCTGAATTATGACGGATTGCTCGATTACGTCGATGACATG
TGTGAACAGGTACTCAGCCGCTACGACATTGTTACCGTCGGTGAGATGAACGGCGTCACCGCTGAACAGGGCGAAGAATG
GGTTGGTGAGCAGCGCGGCAGACTGAATATGATCTTTCAGTTTGAGCACGTAAAGCTGTGGCAGGACGGTCAACACACTA
AAGCGCAGTCTGGCCTCGATCTGATGGGCTTAAAAGATATTTTCACGCGCTGGCAGACGCTGCTGGAAAATAAAGGCTGG
AATGCGTTATACGTCGAGAACCATGATCTTCCCCGCGTGGTGTCAGGATGGGGCGACGCGGAAAACTATCATCGTGAGAG
TGCGACTGCCATTGCAGCTATGTACTTCCTGATGAAAGGAACGCCGTTTATCTATCAGGGACAAGAGCTCGGCATGACCA
ATACGCATTTCGCCAGCCTGGATGATTTTGACGATGTTGCCGCAAGAAAACGTGCGAGTGAAATGCGCAGACAGGGCATG
GAGGAGTCAGACATTCTGGCAATTCTTAGCCGTACCGGGCGCGATAACTCACGTACACCGATGCAGTGGGATCACAGCAT
TCATGGCGGTTTCAGCTCCGTGACGCCCTGGTTTCCTGCAAACAGCAATTACCGCGAAATCAACGTCGCGCAGCAGCGCG
AAGATAACCATTCCGTTCTGAATTTTTATCGTGCGCTGATCCGCCTGCGGCGGCAGATGCCAGCGCTGATTGAGGGAAAC
TATCAACTCCTGTTGCCTTCCCATCCCCATATTTACGCCTATCTGCGTACGCTGGAAAATCAGCAGATCCTGGTGATCGG
TAATTTCAGCGCCTGTCCACAAGAGGTTGATTCACAACAGTTGGCGCTGGAAGGTGCGCAATTGCTACTGGGTAACTATC
AGGAGGAGGGAGCGCTGCACATTTTACGGCCCTATGAGACACGGATTTATCAACGTTAA

Protein sequence :
MANWWKEAVAYQIYPRSFKDSNRDGIGDINGITEKLDYLKDLGIDLIWICPIYQSPNDDNGYDISDYQQIMAEFGTMADF
DHLLKQVHLRGMRLIIDLVVNHTSDEHPWFVESGSSLDNPKRDWYIWRDGKQGGEPNNWESIFNGSAWKHSAATGQYFLH
LFSERQPDLNWENPGVRSAIYTMMRWWLDKGVDGFRIDAICHMKKEPAFSDMPNPQGLPYVPSFERHLNYDGLLDYVDDM
CEQVLSRYDIVTVGEMNGVTAEQGEEWVGEQRGRLNMIFQFEHVKLWQDGQHTKAQSGLDLMGLKDIFTRWQTLLENKGW
NALYVENHDLPRVVSGWGDAENYHRESATAIAAMYFLMKGTPFIYQGQELGMTNTHFASLDDFDDVAARKRASEMRRQGM
EESDILAILSRTGRDNSRTPMQWDHSIHGGFSSVTPWFPANSNYREINVAQQREDNHSVLNFYRALIRLRRQMPALIEGN
YQLLLPSHPHIYAYLRTLENQQILVIGNFSACPQEVDSQQLALEGAQLLLGNYQEEGALHILRPYETRIYQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
malL YP_251987.1 oligosaccharide alpha-1,6-glucosidase Not tested SCCmec Protein 3e-124 48