Gene Information

Name : Q7S_09690 (Q7S_09690)
Accession : YP_005401739.1
Strain : Rahnella aquatilis HX2
Genome accession: NC_017047
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2111770 - 2112882 bp
Length : 1113 bp
Strand : -
Note : COG0582 Integrase

DNA sequence :
TTGGGTGCCTATCCTGATGTATCTCTGGCTGATGCTCGTCAACAGCGTGACGGTATCCGTAAATTGCTGGCGCAGAATAT
AAACCCAGCACAACTGCGATCCGCTGAAAAAGCCACGGTATTACCGGGAGAGACCTTCAAGGCTGTCGCGCTGAGCTGGC
ATAAAAGCAACAGATCATGGTCAGATAACCATGCCGCCCGTCTGCTTGCCAGCATGAACAATCATATCTTCCCGATAATT
GGACACCTGCCAGCCACCGAACTGAAAACCCGACATTTCATCGACCTGCTGAAAGGAATTGAGCAAAAAGGTCTGCTGGA
AGTGGCGGCACGCACTCGGCAGCATATGTGCAACATCATGCGTCATGCCGTGCATCAGGAGTTGATAGAGCATAATCCGG
CTGCCAATCTGGACGGTATAATCGCCCCTCCGGTTAAACGCCACTACCCTGCCCTTCCCCTGGAACAACTACCAGAACTG
TTAACCCGTATTAAGGACTACAAGCAAGGACGGGAGTTAACCCGCCTGGCAGTATCACTCACCCTGCACCTGTTCATCCG
TTCCAGCGAACTGCGTTTCGCCCGTTGGTCTGAGATCGATTTCAAAAATAGAATCTGGACCATTCCTGCCACTCGCGAGT
CCATCCCCGGTGTCCGCTACTCCGGGCGTGGTGCAAAAATGCGCACTCCACATATCGTTCCACTCTCCGGTCAGTCTATT
GCTATTCTGAAACAGATACGGGAAATATCCGGGCATCAGGTGCTGGTATTCCCCGGCGATCATAATCCGTATAAACCGAT
GTGCGAAAACACGGTCAATAAGGCGCTACGCCTGATGGGCTATGACACAAAAGATGAAATCTGCGGCCACGGATTTCGGG
CAATGGCCTGTAGTGCCCTGATGGAGTCTGGCCTATGGGCGCAGGATGCGGTTGAACGGCAGATGAGTCACCAGGAGCGT
AACAGCGTTCGAGCGGCTTACATCCATAAAGCAGAATATCTCGATGCCCGTAAAGCGATGATGCAATGGTGGTCGGATTA
TCTGGATATGTGCCGGAAAGCGTATGTGCCACCTTATATTTGTGGGAAGGAAATCAGTTACACAATGGGATAA

Protein sequence :
MGAYPDVSLADARQQRDGIRKLLAQNINPAQLRSAEKATVLPGETFKAVALSWHKSNRSWSDNHAARLLASMNNHIFPII
GHLPATELKTRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAVHQELIEHNPAANLDGIIAPPVKRHYPALPLEQLPEL
LTRIKDYKQGRELTRLAVSLTLHLFIRSSELRFARWSEIDFKNRIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSGQSI
AILKQIREISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQDAVERQMSHQER
NSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYVPPYICGKEISYTMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-118 79
int CAA08754.1 integrase Not tested HPI Protein 4e-140 79
int CAB59974.1 integrase Not tested HPI Protein 2e-140 79
int YP_002346908.1 integrase Not tested HPI Protein 2e-139 79
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-139 79
int2 NP_993013.1 integrase Not tested HPI Protein 2e-139 79
int CAA21384.1 - Not tested HPI Protein 2e-139 79
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-130 78
unnamed AAD17660.1 unknown Not tested HPI Protein 5e-136 77
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-101 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-101 61
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-106 59
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-106 59
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 6e-98 56
int AAK00456.1 Int Not tested SHI-1 Protein 1e-92 53
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-92 53
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-92 53
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-92 53
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-92 53
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 9e-93 53
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 9e-93 53
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-93 53
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-94 53
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-94 53
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-92 53
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-94 53
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-93 53
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-91 53
int CAC81896.1 integrase Not tested LEE II Protein 4e-93 52
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-93 52
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-92 52
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-93 52
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-93 52
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-93 52
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-93 52
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-88 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 4e-87 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7S_09690 YP_005401739.1 integrase family protein VFG1536 Protein 3e-98 56
Q7S_09690 YP_005401739.1 integrase family protein VFG0626 Protein 4e-93 53
Q7S_09690 YP_005401739.1 integrase family protein VFG1693 Protein 7e-93 53