Gene Information

Name : sseC (UMN798_1457)
Accession : YP_005396798.1
Strain : Salmonella enterica 798
Genome accession: NC_017046
Putative virulence/resistance : Virulence
Product : pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1442037 - 1443374 bp
Length : 1338 bp
Strand : +
Note : -

DNA sequence : 
GTGAATTCTACTTTTGGCGATGGCAACGCCGCGTGTCTGCTATCCGGGAAAATTAGTCTTCAGGAGGCAAGCAATGCGTT
GAAGCAACTGCTTGATGCCGTACCCGGAAATCATAAGCGTCCATCATTGCCTGACTTTTTGCAGACCAATCCCGCGGTTT
TATCAATGATGATGACGTCATTAATACTCAACGTCTTTGGTAATAACGCTCAATCGTTATGCCAACAGCTTGAGCGGGCA
ACTGAGGTGCAAAATGCATTACGTAATAAGCAGGTAAAGGAGTATCAGGAGCAGATCCAGAAAGCGATAGAGCAGGAGGA
TAAAGCGCGTAAAGCGGGTATTTTTGGCGCTATTTTTGACTGGATTACCGGCATATTTGAAACCGTGATTGGCGCCTTAA
AAGTTGTGGAAGGTTTTCTGTCCGGAAATCCCGCAGAAATGGCTAGCGGCGTAGCTTATATGGCCGCAGGTTGTGCAGGA
ATGGTTAAAGCCGGAGCCGAAACGGCAATGATGTGCGGTGCTGACCACGATACCTGTCAGGCAATTATTGACGTGACAAG
TAAGATTCAATTTGGTTGTGAAGCCGTCGCGCTGGCACTGGATGTTTTCCAGATTGGCCGTGCTTTTATGGCGACGAGAG
GTTTATCTGGCGCAGCTGCAAAAGTGCTTGACTCCGGTTTTGGCGAGGAAGTGGTTGAGCGTATGGTAGGTGCAGGGGAA
GCAGAAATAGAGGAGTTGGCTGAAAAGTTTGGCGAAGAAGTGAGCGAAAGTTTTTCCAAACAATTTGAGCCGCTTGAACG
TGAAATGGCTATGGCGAATGAGATGGCAGAGGAGGCTGCCGAGTTTTCTCGTAACGTAGAAAATAATATGACGCGAAGCG
CGGGAAAAAGCTTTACGAAAGAGGGGGTGAAAGCCATGGCAAAAGAAGCGGCAAAAGAAGCCCTGGAAAAATGTGTGCAA
GAAGGTGGAAAGTTCCTGTTAAAAAAATTCCGTAATAAAGTTCTCTTCAATATGTTCAAAAAAATCCTGTATGCCTTACT
GAGGGATTGTTCATTTAAAGGCTTACAGGCTATCAGATGTGCAACCGAGGGCGCCAGTCAGATGAATACTGGCATGGTTA
ACACAGAAAAAGCGAAGATCGAAAAGAAAATAGAGCAATTAATAACTCAGCAACGGTTTCTGGATTTCATAATGCAACAA
ACAGAAAACCAGAAAAAGATAGAACAAAAACGCTTAGAGGAGCTTTATAAGGGGAGCGGTGCCGCGCTTAGAGATGTATT
AGATACCATTGATCACTATAGTAGCGTTCAGGCGAGAATAGCTGGCTATCGCGCTTAA

Protein sequence : 
MNSTFGDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRPSLPDFLQTNPAVLSMMMTSLILNVFGNNAQSLCQQLERA
TEVQNALRNKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDWITGIFETVIGALKVVEGFLSGNPAEMASGVAYMAAGCAG
MVKAGAETAMMCGADHDTCQAIIDVTSKIQFGCEAVALALDVFQIGRAFMATRGLSGAAAKVLDSGFGEEVVERMVGAGE
AEIEELAEKFGEEVSESFSKQFEPLEREMAMANEMAEEAAEFSRNVENNMTRSAGKSFTKEGVKAMAKEAAKEALEKCVQ
EGGKFLLKKFRNKVLFNMFKKILYALLRDCSFKGLQAIRCATEGASQMNTGMVNTEKAKIEKKIEQLITQQRFLDFIMQQ
TENQKKIEQKRLEELYKGSGAALRDVLDTIDHYSSVQARIAGYRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseC NP_460365.1 translocation machinery component Virulence SPI-2 Protein 3e-178 99
sseC CAA12187.1 SseC Virulence SPI-2 Protein 2e-178 99
sseC AAC28881.1 SseC Virulence SPI-2 Protein 2e-178 99
sseC YP_216408.1 secretion system effector protein SseC Virulence SPI-2 Protein 8e-172 96
sseC NP_456128.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 3e-174 95
sseC NP_805071.1 pathogenicity island effector protein Virulence SPI-2 Protein 3e-174 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseC YP_005396798.1 pathogenicity island effector protein VFG0501 Protein 1e-178 99