Gene Information

Name : RA0C_0995 (RA0C_0995)
Accession : YP_005394471.1
Strain : Riemerella anatipestifer ATCC 11845
Genome accession: NC_017045
Putative virulence/resistance : Virulence
Product : naD-dependent epimerase/dehydratase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 974186 - 975160 bp
Length : 975 bp
Strand : -
Note : -

DNA sequence : 
ATGAATAACAGGAAAATATTAATTACTGGAGGGGCAGGTTTTATTGGCTCGAACCTTACAGAACACTTTTTGAGTAAAAA
TTATCAAGTAAGAGTTTTAGATAACTTTTCCACAGGTCATAAATACAATATAGAACCTTTTTTTAAGAATGAAAAATTTG
AATTAATTGAAGGGGATATTAGGAACTTAGAGATTTGTAATGAGGCATGTGAAGGAGTAGACTATGTCTTACATCAGGCC
GCTTTAGGTTCTGTTCCTCGCTCTATTGAAAATCCAATTACAAGTAATGAAGTTAATGTTTCGGGATTTCTTAATATGTT
GGTAGCAGCTAGAGATGCTAAAGTTAAACGCTTTGTGTATGCAGCAAGTTCTTCTACTTATGGAGATTCCCAATCGTTAC
CAAAAGTAGAAGAGGTTATTGGAAAGCCACTGTCACCTTATGCGATTACTAAATATGTTAATGAACTCTATGCTGATGTG
TTTAGTCGTACTTATGGTATGGAGTGCATAGGCTTGAGATATTTTAATGTTTTTGGTAGAAGACAAGACCCTAAAGGAGC
CTATGCAGCGGTTATTCCAAAATTTGTGATTCAGTTGATGAATTATCAGTCGCCAACCATCAATGGTGATGGTAGTTACT
CAAGAGATTTCACTTATATTGATAATGTGATTCAGATGAATGAGTTAGCAATGTTAACCGATAATCCGGAAGCTGTAAAT
ACCGTTTATAACACGGCGGTAGGAGATAGGACTACTATTAAACAAATGGCAGAATTGCTGAAAAAATATTTGTCAAAATA
TGATGAAAAGATAGCGGCGGTGGAGATTTTGCATGGTCCTAATAGATTGGGAGATATTCCTCACTCCTTGGCATCTATTG
ATAAAGCAAAAGAAAATTTAGGCTATGCTCCAACACATATTTTTGAGCAAGGATTAGAAGAAGCAGTGGATTGGTATTGG
AAGAGGTTGAAATAA

Protein sequence : 
MNNRKILITGGAGFIGSNLTEHFLSKNYQVRVLDNFSTGHKYNIEPFFKNEKFELIEGDIRNLEICNEACEGVDYVLHQA
ALGSVPRSIENPITSNEVNVSGFLNMLVAARDAKVKRFVYAASSSTYGDSQSLPKVEEVIGKPLSPYAITKYVNELYADV
FSRTYGMECIGLRYFNVFGRRQDPKGAYAAVIPKFVIQLMNYQSPTINGDGSYSRDFTYIDNVIQMNELAMLTDNPEAVN
TVYNTAVGDRTTIKQMAELLKKYLSKYDEKIAAVEILHGPNRLGDIPHSLASIDKAKENLGYAPTHIFEQGLEEAVDWYW
KRLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-73 53
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-73 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RA0C_0995 YP_005394471.1 naD-dependent epimerase/dehydratase VFG0430 Protein 7e-74 53