Gene Information

Name : RA0C_0004 (RA0C_0004)
Accession : YP_005393576.1
Strain : Riemerella anatipestifer ATCC 11845
Genome accession: NC_017045
Putative virulence/resistance : Resistance
Product : Co/Zn/Cd efflux system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3070 - 3837 bp
Length : 768 bp
Strand : +
Note : -

DNA sequence :
ATGGACTGCCCATCCGAAGAACAAATGATACGGATGAAACTTGCCGACTTGACAAACATCAACTCGTTGGACTTTGATAT
ACCGAACAGACAACTGACCGTTTTTCACACTGACAATCACGACCAAATTTTTCAACGACTTGACAACTTAAAGTTTGACA
CTTCTCTTATTGACAGCGTTTCGGCAGACAATTACATTTCAACAACCGACAACACAGACCGAGAAAAAAAATTACTTTGG
CAAGTTTTAGCCATCAACTTTTTCTTTTTTGCACTTGAACTTGCGACAGGTTTTATTTCTAACTCAATGGGACTTGTAGC
CGACAGTTTGGATATGCTTGCCGACAGTATTGTTTACGGACTTGCACTTTTTGCAGTTGGTGGGACAATGACACGAAAAA
AGAACATTGCAAAATCGGCAGGTTATTTTCAGTTGACACTTGCGGTTTTTGGTTTTATAGAAGTTATCAGACGATTTGTT
GGAACGGAAACAATTCCAGTATTTCAGACAATGATAATTATTTCAATTCTTGCTCTTATTGGAAACGGACTGTGTTTGTA
TTTACTGCAAAAAAGTAAAAGCAAAGAAGCACATATGCAAGCAAGTATGATTTTCACATCTAATGACGTAATTGTAAACC
TTGGAGTAATTGTAGCAGGCGGACTTGTTTACTTGACAAACTCAAAATATCCTGACCTTATCGTTGGGACAATTGTATTT
TTCATCGTTGGACAAGGAGCATTTAAAATCTTGAAACTATCAAAATGA

Protein sequence :
MDCPSEEQMIRMKLADLTNINSLDFDIPNRQLTVFHTDNHDQIFQRLDNLKFDTSLIDSVSADNYISTTDNTDREKKLLW
QVLAINFFFFALELATGFISNSMGLVADSLDMLADSIVYGLALFAVGGTMTRKKNIAKSAGYFQLTLAVFGFIEVIRRFV
GTETIPVFQTMIIISILALIGNGLCLYLLQKSKSKEAHMQASMIFTSNDVIVNLGVIVAGGLVYLTNSKYPDLIVGTIVF
FIVGQGAFKILKLSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cadA AGK36654.1 Co/Zn/Cd efflux system component Not tested AbaR26 Protein 6e-47 45
ACICU_00235 YP_001844894.1 heavy metal detoxification protein Not tested AbaR20 Protein 8e-47 45
cadA ACN81030.1 Co/Zn/Cd efflux system component Not tested AbaR5 Protein 8e-47 45
cadA ACS32042.1 Co/Zn/Cd efflux system component Not tested AbaR5 Protein 8e-47 45
1_43 CAJ77022.1 Heavy metal detoxification protein Not tested AbaR1 Protein 6e-47 45
1_376 CAJ77095.1 Heavy metal detoxification protein Not tested AbaR1 Protein 6e-47 45
cadA ADZ05770.1 Co/Zn/Cd efflux system component Not tested AbaR11 Protein 6e-47 45