Gene Information

Name : MCC_00870 (MCC_00870)
Accession : YP_005389914.1
Strain : Rickettsia rhipicephali 3-7-female6-CWPP
Genome accession: NC_017042
Putative virulence/resistance : Virulence
Product : chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 130763 - 133336 bp
Length : 2574 bp
Strand : +
Note : COG0542 ATPases with chaperone activity, ATP-binding subunit

DNA sequence :
ATGAATATTGATAAATTTACTGCACATGCTAAATCAGTGATAGCTAGTAGCCAATCACTTGCTGCTAAAAGTGATCATCA
GCAAATATTACCTTTGCATTTATTATCTAGTCTTTTAAGTGAAGAAACAGGTATAATTCAAACCCTTATTAATAATACCG
GCGGTAATATAAACTTATTAAGAGATCAAGTTCAGCTAGAACTAAATAAAATCCCAAAAATTCAGGTTGAGGGAGGGGGG
CAAGTTTATTCTTCTGCTGAAGCTCTTAAAGTTTTAGAAAAAGCTAGTAGCATTGCTAAAGACAGTGGGGATAACTTTGT
AACCATAGAGCGTATATTTGAAGCATTAACTTATGATAATACTATAGCCGGTAAAATTTTAACGAATAATGGAATTAATA
ATAAAAAAATAGCAGCAGCTATTTTACAGCTTCGTAAAGGCAAAAAAGCAGATACCGAATCGGCAGAAAATAGTTACGAT
GCTCTAAAGAAATACGGCAGAGACGTAACAGAGTTTGCCGAAAACGGTAAGCTTGACCCGATAATCGGGCGTGATGAAGA
AATAAGAAGAACGGTGCAGGTACTATCACGACGTATGAAAAATAATCCTGTATTGATCGGCGAACCTGGAGTCGGTAAAA
CTGCTATAATAGAGGGGCTTGCACAACGAATATTTAGTAAGGACGTACCTGAATCGCTTATTAATTGCCGTATTATTGAG
CTGGATATGGGAGCTTTAATAGCGGGAGCTAAATATCGAGGCGAATTTGAAGAGCGTCTTAAAGCAGTGCTTAGCGAAAT
CAAAGAATCAAGCGGTGAAATTATTTTATTTATCGATGAATTGCATCTATTAGTCGGTACGGGAAAAACCGATGGTGCTA
TGGATGCCTCGAATTTACTAAAGCCGATGCTTGCTCGTGGTGAGCTGCATTGTATCGGTGCTACTACTCTAGAGGAATAT
CGTAAATATATCGAGAAAGATGCGGCACTTGCTCGTCGTTTTCAGCCTGTTTACGTGAGTGAGCCGACGGTTGAGGATAC
TATATCAATACTTAGAGGAATTAAAGAAAAATATGAGCTGCATCATGCAGTGCGAATTTCCGATAGTGCAATAGTTGCAG
CAGCGATGTTATCAAACCGTTATATTACCGATCGTTATTTACCTGATAAAGCTATTGATTTGATTGATGAAGCTTGTAGC
CGTATGAAAATAGAGCTATCAAGTAAACCAGAAGAGCTTGATGAGCTGGACCGTCGTATTATTCAGATAAAAATAGAGCT
TGCAGCACTTAAAAAAGAAAATGACGAGCATTCTAAAAAGAAAATAGAGCATTTAACTACAGAATTAGAAAAATTAGAGT
CTAAATCCTATGATATGGGAGCTAAATGGCAAGCTGAAAAGTCTAAACTACAGCAAACACAAAAGCTCAAAGAAGAACTA
GACCGTAGCCGAAACGAGCTTGAACGTGCTGAACGTGATGCTAATCTCGCTAAAGCTAGTGAGCTAAAATACGGAATTAT
ACCTGAGATTATGAAAAAGATTCAGGAAGCCGAAAGTATGGATAATAAAGGGCTGTTAAAAGAAATTGTATCGGAAAGCG
ATATAGCAAGTATTATCTCACGTATTACTGGTATTCCAATTGATACGATGCTATCAAGTGAACGTGAGCGTCTGCTTGTG
ATGGAGCAGAAATTACGAGAATCGGTAATAGGGCAGGATGAGGCAATTAAAGGTGTTAGTGATGCGGTAAGAAGATCACG
TGCAGGGATTCAAGATATTAACCGCCCGCTTGGTTCGTTCTTATTCTTAGGACCGACCGGAGTCGGTAAAACCGAGCTTA
CCAAAGCCTTAGCTGGTTTTCTTTTTGATGACCGTAATGCAATACTTCGTATAGATATGTCGGAATATATGGAGAAGCAC
GCTATTTCTCGCCTGATAGGAGCTCCTCCCGGCTATATCGGATATGATCAAGGTGGGGTGTTGACGGAGGCAGTAAGACG
CCGTCCTTATCAGGTAATATTATTTGATGAGGTTGAAAAAGCCCATCCCGACATATTTAATATTATGCTGCAAATACTTG
ATGAGGGAAGATTAACAGATAGTCAAGGTATAACGGTTGATTTTAAGAATACTATAATAGTTTTAACGTCTAATTTAGGT
GCTGAGATACTCGTTAATCAGAAAGAGGACGAAGATACATATAAAGTAAAGGATGAGGTTATGGAATATGTAAAAGCAGT
ATTTAAACCTGAGTTTTTAAACAGACTAGACGAGATTATATTATTCCATCGCCTAAATCGTAATAATATTCATGATATAG
TTAAGATACAGCTTGAAAGCTTAAGGAAAATTTTACTAGCACAAAATATTATTCTTGAATTTGATGAATCGGCCTTAAAT
TATTTAGCCGAAAAAGGTTATGATCCAAGCTTTGGAGCAAGACCCTTAAAACGCCTTATCCAGCGGGAAATACAAAATAA
TTTAGCCAAAATGATTTTAGCAGGCGAAATAAGTAGCGGTAAAACGGTTAAAATAAATGTAAAGGATAAAGAATTGAAGG
TAACAATGAGTTGA

Protein sequence :
MNIDKFTAHAKSVIASSQSLAAKSDHQQILPLHLLSSLLSEETGIIQTLINNTGGNINLLRDQVQLELNKIPKIQVEGGG
QVYSSAEALKVLEKASSIAKDSGDNFVTIERIFEALTYDNTIAGKILTNNGINNKKIAAAILQLRKGKKADTESAENSYD
ALKKYGRDVTEFAENGKLDPIIGRDEEIRRTVQVLSRRMKNNPVLIGEPGVGKTAIIEGLAQRIFSKDVPESLINCRIIE
LDMGALIAGAKYRGEFEERLKAVLSEIKESSGEIILFIDELHLLVGTGKTDGAMDASNLLKPMLARGELHCIGATTLEEY
RKYIEKDAALARRFQPVYVSEPTVEDTISILRGIKEKYELHHAVRISDSAIVAAAMLSNRYITDRYLPDKAIDLIDEACS
RMKIELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKIEHLTTELEKLESKSYDMGAKWQAEKSKLQQTQKLKEEL
DRSRNELERAERDANLAKASELKYGIIPEIMKKIQEAESMDNKGLLKEIVSESDIASIISRITGIPIDTMLSSERERLLV
MEQKLRESVIGQDEAIKGVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKH
AISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLG
AEILVNQKEDEDTYKVKDEVMEYVKAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLRKILLAQNIILEFDESALN
YLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGKTVKINVKDKELKVTMS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 4e-160 48
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-102 41
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-102 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MCC_00870 YP_005389914.1 chaperone ClpB VFG0079 Protein 3e-165 47
MCC_00870 YP_005389914.1 chaperone ClpB VFG2084 Protein 2e-104 41