Gene Information

Name : Fraau_2605 (Fraau_2605)
Accession : YP_005378631.1
Strain : Frateuria aurantia DSM 6220
Genome accession: NC_017033
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2778287 - 2779507 bp
Length : 1221 bp
Strand : -
Note : PFAM: Phage integrase family

DNA sequence :
ATGGCGAAAGACAGCAACAAGCTGACGGCCCTGGGCATCAAGTCCCTGGGCACGGGCAAGCACTACGATGGCGGCGGCCT
TCATCTCAAGGTCGAGGCGACGGGCCGGAAGTATTGGCGTTACGACTTCCGGATTGCGGGCAAGCCAGACACGTTCGCCG
TCGGCGTCTATCCCAAGGTCACGCTGGCAGAGGCACGGCTGCGCCATGCGGAGGCATCGGCACTGGTCAGCCAGGGCATC
AACCCGAAGGCGCACAAGCGAGCGAAGCAGGCCGCCGCCGTGGTCGCCAATGCCAACACCTTCCAGGCGGTGGCCGATGA
GTGGATGGCCCAGCAAAAGCCCAAGATGGCGAAAGCCACCTATGACAAGGCCATGTGGATGCTGGCGGATCTGGTCTATC
CCTGGCTGGGCAAGCGACCGATATCCGAGATCGATGCGCCGGAGCTGCTGGCGGTCCTGCGCCGGATCGAGGAGCGCGGC
GCCAATGAAACCGCCCACCGGACCAAGCAGCGGTGCGGACAGATCTTCCGGTATGCCATCGCCACCGGCCGAGCCAAGCA
TGACCCGTCCGGCGATCTGCGCGGTGCCCTGGCGCCGCCCATCACCAAGTCCCGAGCGGCGATCACCGATCCCCAGAAGG
TGGGCGAGCTGCTGCGAGCCATTGATGGCTACTCGGGCAGCTTTTCCGTCATCTGTGCGCTGCGGCTGGCACCGATGCTG
TTTGTCCGGCCGGGTGAACTGCGGCATGCCGAGTGGGCCGAGTTCGATCTGGATCAGGGCCTGTGGCGCATCCCCGCCGA
GAAGATGAAGATGCGCGACGAACACCTGGTGCCACTGCCTGACCAGGCGCTGGCGATTCTGCGGGATCTGCTGCCGCTGA
CCGGGCCCGATGGCTACCTGTTTCCGGGGGAGCGCAGTGCATCGCGGCCCATGTCGGAGAACACCGTTAATGCCGCGCTT
CGCCGGCTGGGCTATGACAAGGACACCATGACCGGACACGGCTTCCGGGCCATGGCCAGCACCCGGCTCAACGAGCTGGG
CTGGTCGCCAGATGTGATCGAGCGCCAGCTGGCCCACGCCGAACGCAACAAGGTGAGGGCGGCATACAACCGGGCGCAGT
ACCTGCCCGAACGCCAGCGGATGATGCAGGCCTGGGCGGATTACTTGGACAGTCTCAAGGCTGGCGGCACGGTGGTGGCC
TTCAAGAGCAAAGCGGGCTGA

Protein sequence :
MAKDSNKLTALGIKSLGTGKHYDGGGLHLKVEATGRKYWRYDFRIAGKPDTFAVGVYPKVTLAEARLRHAEASALVSQGI
NPKAHKRAKQAAAVVANANTFQAVADEWMAQQKPKMAKATYDKAMWMLADLVYPWLGKRPISEIDAPELLAVLRRIEERG
ANETAHRTKQRCGQIFRYAIATGRAKHDPSGDLRGALAPPITKSRAAITDPQKVGELLRAIDGYSGSFSVICALRLAPML
FVRPGELRHAEWAEFDLDQGLWRIPAEKMKMRDEHLVPLPDQALAILRDLLPLTGPDGYLFPGERSASRPMSENTVNAAL
RRLGYDKDTMTGHGFRAMASTRLNELGWSPDVIERQLAHAERNKVRAAYNRAQYLPERQRMMQAWADYLDSLKAGGTVVA
FKSKAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-62 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-62 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-62 43
int ACU09430.1 integrase Not tested LEE Protein 2e-62 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-62 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-59 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 8e-59 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-61 42
int CAC81896.1 integrase Not tested LEE II Protein 5e-58 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-60 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-60 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-60 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-60 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-60 42
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 8e-60 42
int AAL51028.1 CP4-like integrase Not tested LEE Protein 8e-60 42
int-phe AAL60261.1 Int-phe Not tested LEE Protein 8e-60 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-59 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-60 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-60 42
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-59 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-60 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-59 42
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-59 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-59 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 8e-60 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-62 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-62 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-62 42
int AAD44730.1 Int Not tested SHI-2 Protein 3e-62 41
int CAC39282.1 integrase Not tested LPA Protein 7e-63 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-63 41
int AAK00456.1 Int Not tested SHI-1 Protein 5e-59 41
intA AAB00935.1 integrase A Not tested vap locus Protein 2e-50 41
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-58 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-57 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-57 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Fraau_2605 YP_005378631.1 Integrase VFG0783 Protein 1e-62 43
Fraau_2605 YP_005378631.1 Integrase VFG0626 Protein 5e-61 42
Fraau_2605 YP_005378631.1 Integrase VFG1693 Protein 3e-60 42
Fraau_2605 YP_005378631.1 Integrase VFG0598 Protein 3e-62 42