Gene Information

Name : zraR1 (COCOR_00920)
Accession : YP_005366926.1
Strain : Corallococcus coralloides DSM 2259
Genome accession: NC_017030
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1098391 - 1099803 bp
Length : 1413 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCGGCGCGAAGCCCTCGGTCCTTGTCGTGGACGACAAGGAGAACATGCTCAAGCTGTTCGCGCGCATCCTCGGGGA
CGCGTACGCGGTGACGACCGCGCCCGACGGGGTGCAGGCGCTGGCCCTGCTCTCCGCGCGCACGTTCGACGTGGTCGTCA
CGGACATCCAGATGCCGGGCGCGGACGGCTTCACGGTGCTGCGCGAGGTGAAGCGGCGCGCGCCGGACACGGAGGTCGTC
CTCGTCACCGCGTACGCGAGCATCCCCAAGGCCGTGGAGGCCATCAAGGAAGGCGCGTACGACTACCTGTCCAAGCCCTT
CGACCCGGACGAGGTGGCTCTGGTCGTCGCCCGCGCCCTGGAGCGCCAGCGCCAGCGCCGGGATGCACTGGGACTCACCG
CCCGCGTGGCGCGCATGCCGGACTTCCACGGCCTGCGCGGCACCAGCCCCGCCCTCCAGAAGACGCACGCGCTGCTCGCG
CAGGTGGCCTCTCGCGACCTCACCGTGGTGCTCACCGGCGAGACGGGCACCGGCAAGGAGCTGGCCGCCCGCGCGCTGCA
CCGCGAGAGCCCGCGCCGCGACAAGCCCTTCGTCGCGGTGAACTGCGGCGCGCTGCCGGCGGAGCTGGTGGAGAGCGAGC
TCTTCGGCCACGCGAAGGGCGCCTTCACCGGGGCGACGGGCGCGAAGGCCGGCCTCTTCGAGGAGGCCCACGGCGGCACG
CTCTTCCTGGATGAAGTAGGCGACCTGCCGCTGCCCGTGCAGGTGAAGCTCAACCGCGCGCTCCAGGAGAAGGAGATCCG
CCGCGTGGGCACCACCACGCCGGTGACGGTGGACGTGCGCGTGGTGGCGGCGACGCACCGGGACCTGGCGCAGGAGGTGG
CTGGAGGGCGCTTCCGCGAGGACCTCTACTACCGGCTGGAAGGCGTGACGGTGCGGATGCCCGCCCTGCGCGAGCGCCGC
GAGGACATCCCGCTGCTCGCCATGCACTTCCTCGCTGGCGCGAACCGGCCGGAGCTGGAGGGCTTCACGCCCCAGGCACT
CCAGGCGCTCACCGCCGCGCCGTGGCCCGGCAACGTGCGGCAGCTGCAGAACGCGGTGGCGCGCGCGGCGGCGGTGGCGG
CGGGGCCCCGCATCACCCCGGAGGACCTGCCGCCCGAGCTCACCACCACCTCGGCCCGCGCCTCCGCGGCCCCGGGGCCG
CTGCCAGCGGAGGCCCTGGCGAAGCAGCCCTACCGTGAGGCGGTGGACCGCGTGCGCGACGCCGTGTCACGCGACTACCT
CACCGCGCTGATGCAGGAGTTCTCCGGCAACGTCACCCACGCGGCCGAGCGCGCGGGCATGGAGCGCGAAAGCCTGCACC
GCCTGCTCAAGCGCTACGGCGTCCGCACGGAGGACTTCAAGCGCGGCGACTGA

Protein sequence : 
MSGAKPSVLVVDDKENMLKLFARILGDAYAVTTAPDGVQALALLSARTFDVVVTDIQMPGADGFTVLREVKRRAPDTEVV
LVTAYASIPKAVEAIKEGAYDYLSKPFDPDEVALVVARALERQRQRRDALGLTARVARMPDFHGLRGTSPALQKTHALLA
QVASRDLTVVLTGETGTGKELAARALHRESPRRDKPFVAVNCGALPAELVESELFGHAKGAFTGATGAKAGLFEEAHGGT
LFLDEVGDLPLPVQVKLNRALQEKEIRRVGTTTPVTVDVRVVAATHRDLAQEVAGGRFREDLYYRLEGVTVRMPALRERR
EDIPLLAMHFLAGANRPELEGFTPQALQALTAAPWPGNVRQLQNAVARAAAVAAGPRITPEDLPPELTTTSARASAAPGP
LPAEALAKQPYREAVDRVRDAVSRDYLTALMQEFSGNVTHAAERAGMERESLHRLLKRYGVRTEDFKRGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-35 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
zraR1 YP_005366926.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 3e-109 62
zraR1 YP_005366926.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 2e-54 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
zraR1 YP_005366926.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 5e-41 46
zraR1 YP_005366926.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 3e-46 44