Gene Information

Name : fliP1 (COCOR_06139)
Accession : YP_005372092.1
Strain : Corallococcus coralloides DSM 2259
Genome accession: NC_017030
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7738259 - 7738984 bp
Length : 726 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAGTCCTCGGATTCGGATGCGGCGTGTTCCTGCCCATGAGCGCATTCGCCGCGGAGCAGTCCCTGTCGCAGGCGTC
CTATGCCGGCAGTCCGCTGGCGATGATGGGGATGCTCGCGCTCCTGTCGCTCCTGCCGTTCGCGGTGCTGATGCTGACGA
GCTTCTCGAAGATCGCCGTGGTGCTCTCCCTGGCCCGCTCGGCGATGGGTACGCAGCAGGCACCGCCGACGGTGGTGCTC
ACGGGGCTCGCGGTGGTGCTGACGGGGCACATCATGGCGCCGGTGATGGAGCGCATGTACGACGCGGGACAGGCGGCGTA
CGACGAGGTGCATTCCGGAGCGCAGGTCCTCTCCGCCGCGAAGCAGGTGACGGAGCCCCTGCGCGCCTTCCTCATGAAGC
ATGGAGGCCCAGAGGAGCGGGCCCGCTTCGTGGACCTGGCTCGTGAGCTGCGTCCTCCAGAGGAATCCGAGCAGGTGCAG
GAGACCGACCTGTTCGTCGTCATCCCGGCCTTCGTCATCACCGAGCTGAAGGAGGCCTTCCAGATTGGCTTCATCGTCTT
CCTGCCCTTCCTGGTGCTCGACATGGTCATCGCCAACGTGCTGCTCGCGTTGGGCATGCAGACGTTGTCGCCGGGCCAGG
TGAGCCTGCCCTTCAAGATCCTCCTCTTCGTCGCCGTGGATGGCTGGGCCCTGCTCGCGCGGGGACTCATCCTCGGCTAC
CGGTGA

Protein sequence : 
MKVLGFGCGVFLPMSAFAAEQSLSQASYAGSPLAMMGMLALLSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTVVL
TGLAVVLTGHIMAPVMERMYDAGQAAYDEVHSGAQVLSAAKQVTEPLRAFLMKHGGPEERARFVDLARELRPPEESEQVQ
ETDLFVVIPAFVITELKEAFQIGFIVFLPFLVLDMVIANVLLALGMQTLSPGQVSLPFKILLFVAVDGWALLARGLILGY
R

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-34 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-34 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-34 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-34 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-36 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-36 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-36 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-36 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-36 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-36 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-36 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-36 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-27 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-27 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP1 YP_005372092.1 type III secretion system protein VFG0044 Protein 7e-37 44
fliP1 YP_005372092.1 type III secretion system protein VFG2338 Protein 1e-31 44
fliP1 YP_005372092.1 type III secretion system protein VFG2494 Protein 5e-32 44
fliP1 YP_005372092.1 type III secretion system protein VFG0394 Protein 1e-33 43
fliP1 YP_005372092.1 type III secretion system protein VFG1259 Protein 7e-29 43
fliP1 YP_005372092.1 type III secretion system protein VFG0188 Protein 5e-32 42