Gene Information

Name : fliP (COCOR_05631)
Accession : YP_005371584.1
Strain : Corallococcus coralloides DSM 2259
Genome accession: NC_017030
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7071019 - 7071843 bp
Length : 825 bp
Strand : -
Note : -

DNA sequence : 
GTGAACCGTTCGTCTCCCGCTCGCCCGCTGCTGTTCCGCGCTCCGCCCTGGCTCTTCGCGGCCCTCGTGTCGCTGCACCC
CTTCGTCGCGTCCGCGGCGAAGAAGGGCGGCGACTCGGCGCCGGATGCAATGGTCAAGGAGGCGGTGAGCTCCGACACCT
TCACCTCCCGTCCGCTCATCCTCATCCTCGCGCTCGCGGCCATGTCCCTGGTCCCGTTCGCGCTGATGATGGTGACCAGC
TTCGTGAAGATCTCGGTGGTGCTCTCCATCGTCCGCTCGGCGCTGGGCACCCAGCAGATTCCCCCCACCCAGGTCATCAC
CGGCCTGGCCATCATCCTCACCGTCTACATCATGGCCCCCGTGGGCCAGGAGATGTACCGGGCGGGCGGCATCGACATCT
GGTCCCGGGGAACGTCGGTGTTCTCCTCGGAGACGGTGGGCACGATGCTGGGGGCCGCGGACAAGTCCAAGGAACCCCTG
CGCGAGTTCCTGATGAAGAAGGTCACCAACAAGGACCGCACGCTCTTCTACAGCCTGGCGAAGAAGATGCGGAAGGAGGA
GGACCGCAAGGACATTGGCCCGAATGACTTCATGGTCATCGTCCCGGCCTTCGTCGTGTCCGAATTGAAGGAGGCCTTCC
AGATCGGCTTCCTCTTGTTCGTGCCCTTCATCGTCATCGACATGGTGGTGGCGAACATCCTCCTGGCGCTGGGCATGCAC
ATGCTGTCGCCCACGACCATCTCCATGCCCTTCAAGCTCTTGTTGTTCGTGCTCGTGGACGGTTGGTACCTCATCGCCAA
GGGCCTGGTCATCGGCTACCTGTAA

Protein sequence : 
MNRSSPARPLLFRAPPWLFAALVSLHPFVASAAKKGGDSAPDAMVKEAVSSDTFTSRPLILILALAAMSLVPFALMMVTS
FVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQEMYRAGGIDIWSRGTSVFSSETVGTMLGAADKSKEPL
REFLMKKVTNKDRTLFYSLAKKMRKEEDRKDIGPNDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMH
MLSPTTISMPFKLLLFVLVDGWYLIAKGLVIGYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-39 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-42 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-42 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-41 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-35 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-37 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-41 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-41 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-41 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 8e-34 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 8e-34 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 8e-34 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-41 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-41 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-31 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-31 42
escR AAK26700.1 EscR Virulence LEE Protein 1e-31 41
escR AAL57527.1 EscR Virulence LEE Protein 1e-31 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-31 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-31 41
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-31 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-31 41
escR AAC31528.1 L0049 Virulence LEE Protein 1e-31 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-31 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-31 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-31 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005371584.1 type III secretion system protein VFG0188 Protein 2e-41 46
fliP YP_005371584.1 type III secretion system protein VFG0394 Protein 1e-36 46
fliP YP_005371584.1 type III secretion system protein VFG0044 Protein 1e-44 46
fliP YP_005371584.1 type III secretion system protein VFG2338 Protein 5e-37 45
fliP YP_005371584.1 type III secretion system protein VFG1259 Protein 3e-35 43
fliP YP_005371584.1 type III secretion system protein VFG2494 Protein 3e-36 42
fliP YP_005371584.1 type III secretion system protein VFG0827 Protein 8e-32 41