Gene Information

Name : lolD1 (COCOR_00259)
Accession : YP_005366267.1
Strain : Corallococcus coralloides DSM 2259
Genome accession: NC_017030
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 299322 - 300068 bp
Length : 747 bp
Strand : +
Note : -

DNA sequence : 
ATGATGACGACGATGACGAACGACCGCGAGACGAAGGCCGTGGCCCCGGGCGCGGTGCCGGGCAAGGCGCTGCTCCAGCT
CGACGGGCTCACCAAGGTGTTCGAGACGGAGGAGGTGGAGACGCACGCCCTCTCCAACATCCAGCTCACCATCCGCCAGA
ATGAATGGGTGGCCATCGTCGGCCCGTCCGGCTCCGGCAAGTCCACGCTGCTCGCGGTGCTGGGGCTGCTGGACACCGCC
ACGCGCGGCAGCTACCTGCTGGATGGCCGGAGCGTGCTGGAGCTGTCGCCCACGGACCGGGCGAAGGTGCGCAACCAGCA
CATCGGCTTCATCTTCCAGAGCTTCAACCTCATCGGCGACCTCACCGTCTTCGAGAACGTGGAGCTGCCGCTCACCTACC
GGGGGCTGCCCGCGCAGGAGCGCAAGCAGCGCGTGGAGCGCGCCCTGGAGCGCGTGGGCATGGCGCACCGGGCACGGCAC
CTGCCAGGGCAGCTGTCCGGCGGCCAGCAGCAGCGCGTGGCGGTGGCGCGCGCCGTGGCGGGAGACCCCCTCATCCTCCT
GGCGGACGAGCCCACGGGCAACCTGGACTCGAAGAACGGCGAGGCGGTGATGCAGCTGCTGTCCGACCTGCACAAGGCGG
GCTCCACGCTGTGCATGGTGACGCACGACCCGGCGCACGCGCGCATCGCCACGCGCACGGTGAGCCTGTTCGACGGCCGC
GTCGTGCAGGACGAACAGCTTCGCTGA

Protein sequence : 
MMTTMTNDRETKAVAPGAVPGKALLQLDGLTKVFETEEVETHALSNIQLTIRQNEWVAIVGPSGSGKSTLLAVLGLLDTA
TRGSYLLDGRSVLELSPTDRAKVRNQHIGFIFQSFNLIGDLTVFENVELPLTYRGLPAQERKQRVERALERVGMAHRARH
LPGQLSGGQQQRVAVARAVAGDPLILLADEPTGNLDSKNGEAVMQLLSDLHKAGSTLCMVTHDPAHARIATRTVSLFDGR
VVQDEQLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-24 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-24 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD1 YP_005366267.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-38 52
lolD1 YP_005366267.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-46 49
lolD1 YP_005366267.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-29 42
lolD1 YP_005366267.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 4e-24 41
lolD1 YP_005366267.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-26 41
lolD1 YP_005366267.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 3e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD1 YP_005366267.1 ABC transporter ATP-binding protein VFG2059 Protein 2e-08 42