|
Name : yfhA1 (COCOR_02144) Accession : YP_005368135.1 Strain : Corallococcus coralloides DSM 2259 Genome accession: NC_017030 Putative virulence/resistance : Unknown Product : RNA polymerase sigma factor 54 Function : - COG functional category : - COG ID : - EC number : - Position : 2576352 - 2577779 bp Length : 1428 bp Strand : + Note : - DNA sequence : TTGACGCCTGAGCCCACCGCCCAGCAGCCCCATGTGCTCCTGGTGGACGATGACCTCCAGCTCGCGGAGCTCATGTCCAT GCGGATGACTTCACGCGGCTACCGCGTGACCGTGGAGGGCGAGGGCAGGAGCGCCCTGCGCAGACTCGCGCAGGAGCGCG TGGACGCGATGGTGTTGGACCTGCGTCTGGAGGACATGGATGGCATGGACGTGCTCCGGGCCGCGCGGCAGCGTGCCCCC GAGCTGTCCGTCATCATGCTCACCGCGCACGGCTCCATCGAAACCGCGGTGCAGGCCATGCAGGAGGGGGCCTACGGCTT TCTCACCAAGCCGTTCCACGACCACGAGCTCATGCAGAAGCTCACGCACGCGCTCGAGCGCTCGCTGCTGCGCCGGGAGG TGGCCGAGCTGCGGCGTCGCATGGGGGAAGAGGGCGAGCCCCTGCTCCTGGGCATCAGCGACGCCATCTCGCGCGTGCGC GAGGTGATTGCCCGCATTGCCCCCACGGACGCCACCGTCCTGCTCACCGGCGAGAGTGGCACAGGCAAGGAGCTGGCGGC GCGGATGCTCCACGTGCTGTCGCGCCGCAACGCGGGGCGCTTCGTCGCCGTCAACTGCGGCGCCCTTCCGCCGGAGTTGC TGGAGAGCGAGCTGTTCGGACACGTGAAGGGCGCGTTCTCCGGGGCCGTGCGCGAGCGCGAAGGCCTGTTTGGCGCGGCC AATGGCGGCACGCTGTTCCTGGATGAGATTGGCGAGGCGTCCCCGTCCGTGCAGGTGAAGCTCTTGCGCGTGCTACAGGA GCAGCGGCTCACGCGCGTGGGCGCGGACGTGGAGGAGTCCGTGGACGTGCGGGTGGTCGCCGCCACCAACCGGGACCTCT CGGAAGAGGTGGCCGCGAAGCGCTTCCGTCAGGACCTCTACTTCCGCCTGCACGTGGTGCCCATCGAGCTGCCGCCCCTG CGCGAGCGGCTCGAGGACATCCCGTTGCTCGCGCAGCTCTTCCTGGAGCGCACGGCGAACCGCTATGGCCTGCGTCCGCC GCGCCTCGCGCCCGCGACGGTGGAACTCATGCAGCGCTACAACTGGCCGGGCAACGTCCGGGAGCTCATCCACGAGATGG AGGCCGCGGTGCTCCTGGCCGGCGCGGACGAGCTTCAGCCTCGACATGTGCCTCGCCTGGGGCAGGCGCTGGAGCGGCCC CCGGCCGAAAGCTCGCAGCTGCCTGGCGTTCCAGGCGGGACCGCGGACCTGCCCTCGCTGCGCGAAGCCCGTGATGCCTT CGAGCGCGCCTACCTCGCGGAGGCCATGCGCCGCTGCAGCGGCAGTGTCAGTGCCGCGGCTCGAATGGCCGGGCGCAACC GGAGCGACTTCTACGACCTGCTCAAGCGGCACGGGCTGTCCGCCGCTGACTTCAAGGGAACAGAGTAG Protein sequence : MTPEPTAQQPHVLLVDDDLQLAELMSMRMTSRGYRVTVEGEGRSALRRLAQERVDAMVLDLRLEDMDGMDVLRAARQRAP ELSVIMLTAHGSIETAVQAMQEGAYGFLTKPFHDHELMQKLTHALERSLLRREVAELRRRMGEEGEPLLLGISDAISRVR EVIARIAPTDATVLLTGESGTGKELAARMLHVLSRRNAGRFVAVNCGALPPELLESELFGHVKGAFSGAVREREGLFGAA NGGTLFLDEIGEASPSVQVKLLRVLQEQRLTRVGADVEESVDVRVVAATNRDLSEEVAAKRFRQDLYFRLHVVPIELPPL RERLEDIPLLAQLFLERTANRYGLRPPRLAPATVELMQRYNWPGNVRELIHEMEAAVLLAGADELQPRHVPRLGQALERP PAESSQLPGVPGGTADLPSLREARDAFERAYLAEAMRRCSGSVSAAARMAGRNRSDFYDLLKRHGLSAADFKGTE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 5e-62 | 42 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 5e-62 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfhA1 | YP_005368135.1 | RNA polymerase sigma factor 54 | BAC0467 | Protein | 2e-73 | 44 |
| yfhA1 | YP_005368135.1 | RNA polymerase sigma factor 54 | BAC0089 | Protein | 1e-80 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfhA1 | YP_005368135.1 | RNA polymerase sigma factor 54 | VFG1214 | Protein | 2e-67 | 42 |
| yfhA1 | YP_005368135.1 | RNA polymerase sigma factor 54 | VFG1249 | Protein | 4e-60 | 41 |
