Gene Information

Name : sphR (COCOR_01238)
Accession : YP_005367244.1
Strain : Corallococcus coralloides DSM 2259
Genome accession: NC_017030
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1487958 - 1488671 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCACGTCCGTCCCCCAAGAGGAGAAGCCCCAGCGCATCCTGGTGGTGGAGGACGACCTGTCCATCCTCACCGGCGT
GTCCATGAACCTGCGCTTCGAAGGCTACGAAGTGCTCCAGGCGCAGGACGGCCGCACGGGCCTGGCCAAGGCGCTGGACG
AGGCGCCGGACCTGCTGGTGCTGGACCTGATGCTGCCGGAGATGAACGGCTACGAGGTCATCCGCGAGCTGCGCCAGCGC
GGCCGGGACACGCCCGTGGTGGTGCTGTCCGCGCGAGGCCTGGAGTCGGACAAAATCCTGGGTCTCAACCTGGGCGCGGA
CGACTACGTGGTGAAGCCGTTCGGCCTCCAGGAGTTGCTCGCGCGCATCAAGGCGGTGCTGCGCCGCAGGTTCGGGGCCA
CGGGCATCACGCCGCCGCCGGTGACGTTCGGGGACGTGAAGGTGGACCTGTCCCAGCGCACGGTGGCGCGCGACGGGCAG
CCGGTGGAGCTGACGGCGCAGGAGTTCAAGCTGCTGGCGCACTTCCTCGCCCACCCGGGCCGCACCTTCACCCGCGAGGA
GCTCTTGTCCGGCGCGTGGGGCTACCACTACGAGGGCAGCGCGCGCACGGTGGACAACTTCATGCGCCAGCTGCGGCTGA
AGTTCGAGGCCGACCCGGAAGCGCCCCGGCACTTCCTCACCGTGCGCGGCCTGGGCTACCGCTTCGAGCGATAG

Protein sequence : 
MSTSVPQEEKPQRILVVEDDLSILTGVSMNLRFEGYEVLQAQDGRTGLAKALDEAPDLLVLDLMLPEMNGYEVIRELRQR
GRDTPVVVLSARGLESDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRFGATGITPPPVTFGDVKVDLSQRTVARDGQ
PVELTAQEFKLLAHFLAHPGRTFTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEADPEAPRHFLTVRGLGYRFER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sphR YP_005367244.1 DNA-binding response regulator HE999704.1.gene2815. Protein 2e-43 45
sphR YP_005367244.1 DNA-binding response regulator AE016830.1.gene1681. Protein 1e-43 43
sphR YP_005367244.1 DNA-binding response regulator NC_012469.1.7685629. Protein 4e-40 43
sphR YP_005367244.1 DNA-binding response regulator NC_012469.1.7686381. Protein 3e-37 42
sphR YP_005367244.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 7e-41 42
sphR YP_005367244.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 7e-41 42
sphR YP_005367244.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 1e-40 42
sphR YP_005367244.1 DNA-binding response regulator CP001485.1.gene721.p Protein 1e-33 41
sphR YP_005367244.1 DNA-binding response regulator AE000516.2.gene3505. Protein 4e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sphR YP_005367244.1 DNA-binding response regulator VFG1390 Protein 4e-40 43
sphR YP_005367244.1 DNA-binding response regulator VFG1389 Protein 7e-37 42
sphR YP_005367244.1 DNA-binding response regulator VFG1702 Protein 2e-37 41