Gene Information

Name : kdsB (COCOR_01039)
Accession : YP_005367045.1
Strain : Corallococcus coralloides DSM 2259
Genome accession: NC_017030
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1251085 - 1251831 bp
Length : 747 bp
Strand : -
Note : -

DNA sequence :
ATGCCCGCCTCCCGCACCGTGGCCGTCATCCCCGCCCGCCATGCCAGCACACGCTTCCCTGGCAAGCCGCTCGCCCTCAT
CGCCGGCCGTCCGATGATCGAACACGTCTGGCGCCGCTGTCAGGAAGCCCGCGCCTTCGACGAGGTGTGGGTGGCCACGG
ACGACACGCGGATCCGCGACGTCGTGGAGGGCTTCGGAGGCAAGGCGGTGATGACCAGCCCCACCTGCCCCACCGGCACG
GACCGCATCGCGGAGGTCGCCCGCGCCCGCCCAGACGTGGAGGTGTGGGTGAACGTGCAGGGAGATGAGCCGCTCGTGGA
CCCCGCCGCCCTCAAGGTGCTCGCGGACCTCTTCCAGGACGAAAGCGTGCACATGGGCACCCTGGTGCGTCCCCTGGAAA
CGGAGGAGGTGGACAACCCCAACGTGGTGAAGGCCGTGCTCGCCCTCAACGGCGACGCGCTCTACTTCAGCCGCGCCGCG
GTGCCGCACGCCCGCGACCCCGGCACACCCGTGCGCCGCTGGGCCCACCTGGGCCTCTATGGCTACCGGCGGGACACGCT
GCTCCAGCTCGCCTCCTTCAGCCCCACCCCTCTGGAGGAGACGGAGAAGCTGGAGCAGCTGCGCGCCCTGGAGAACGGCC
TGCGCATCCGCTGCGCCAGCGTGAACTGGCGCACCGTGGCGGTGGACGTGCCGGAGGACGTGGCCCGGGTCGAAGCCGTG
ATGCGCGAGCGCGCCGCCGTCAGATGA

Protein sequence :
MPASRTVAVIPARHASTRFPGKPLALIAGRPMIEHVWRRCQEARAFDEVWVATDDTRIRDVVEGFGGKAVMTSPTCPTGT
DRIAEVARARPDVEVWVNVQGDEPLVDPAALKVLADLFQDESVHMGTLVRPLETEEVDNPNVVKAVLALNGDALYFSRAA
VPHARDPGTPVRRWAHLGLYGYRRDTLLQLASFSPTPLEETEKLEQLRALENGLRIRCASVNWRTVAVDVPEDVARVEAV
MRERAAVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK15335.1 unknown Not tested Not named Protein 4e-29 45
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 5e-42 42
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 9e-42 42
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 7e-42 42