Gene Information

Name : phyA (PMCN06_0842)
Accession : YP_005363262.1
Strain : Pasteurella multocida HN06
Genome accession: NC_017027
Putative virulence/resistance : Virulence
Product : PhyA,Capsule polysaccharide export protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 909850 - 911907 bp
Length : 2058 bp
Strand : -
Note : -

DNA sequence :
ATGTATCAAGAGTTTCTTATTTTTTCTAAAGGGATGTTAAAAATTCCTTATTTAAGCGGTTTTTTTACCCAACGCTTAAA
AATGTTCTCTCCGTTTGTCACATGGAAAAAGGAGAGAACATGTATTTTAGAATGGGGATATAAAGCATCATCAAAGAAGG
CGAGATATTTTGCACAACAACATGATTTACCTTATGCGACGATAGAAGATGGTTTTTTACGTTCTATTGGACTGGGTGTG
GATGGGTATCCACCTTTCTCATTAGTGTACGATGATATTGGTATTTATTATGATATCAATCAGCCTTCTCGTTTAGAAAA
CTTAATTCTTTCTCAGGATGTATTGCTTCAGGAGCAAGTCGATCAAGTTAAATATGCAATTGAATTAATTTGTACACATA
ACCTTTCCAAATATAACCACGCGATTGATACACCTTTACAGAATACGAAGAGGCCGATTGTCTTAGTCGTTGATCAAACA
TATGGCGATATGGCAGTTACTTTCGGGAATGCTGGACAAGGTGATTTTCTACACATGTTAGAGCGTGCGATTATTGAAAA
TCCAACAGCAGAAATCTGGTTAAAAATCCATCCTGATGTAATGTGTGGTAAAAAACAAGGCTATTTAACGGAATATCAGC
AATTTCCAAGAGTAAAAGTATTATCAGAAGATTTTAATTCTATCTCACTACTAAAGCATGTTGATAAAGTTTATTGCGTG
ACATCTCACACTGGGTTTGAGGCCCTTTTGTTAGGAAAAACCGTCGTGACTTTTGGGGCAGCTTGGTTTTCTGGTTGGGG
ATTGACGGATGATCGGCATGCGTATATTCGTCAGCTAAAACAGAGTAAGAGAAGAGCGAAGCGTTCATTTTTGCAGTTAT
TCTATTCAGCTTATTTCCAATATTGTCGTTATATTAATCCTAATACGGGTAAATCTGGCACATTGTTTGATGTCATTGAT
TATCTTATTCAAGCAAAAAAAGTAACTAATCAATTAGCGGGTGATATTTATTGTGTCGGTATGCGTTTTTGGAAACGCAA
AGTGGTTCAGCCCTTTTTTCAATTTCCGCGCTGTCGTTTACATTTTGTGCAAAATATTCATGAGCTAAAGCGATGTATCC
GTGATAAATCTCAAGCTAAAGTGGTGGTGTGGGGACATTCACACAGTGAAGAGGTTGAATACGCCAAACAACAGCAGCTT
CCTCTTTTGAGAATGGAAGATGGTTTTTTACGTTCTATTGGATTGGGGTCTAATTTAACGCCACCGATATCCTTGGTCTT
AGATGACGTTGGCATTTATTTTGATGCTCAATCTCGTTCCCGATTAGAGGATATTCTGCAACATCAGTCCTTTAATCTGA
GGGATTTACAGCTAGCAGAGATGTTAAAAAAAACACTGATTGCGCAGCATATTAGTAAATATAATGTGGGACATACACAC
TTATGCCTAACACACATCAGACAAAATAAACTTTTAGTTGTGGGACAGGTGGAAAATGATGCTTCAATTCAATATGGTTC
ACCGCATATTCGTACTAATTTAGATTTATTATGTACGGTCAGAAAAAATAATCTCCAAGCCTATATTATTTATAAACCTC
ATCCTGATGTGGTTGCAGGCAATCGTAAAAACACAGATCGTCTAGATGATTATCGACAGTATGCTGATTTCGTGGTTGAG
AAAGCCAATATATTGGATTGCATTAACCAAGTGGATGAAGTGCATACGATGACCTCTTTAGCGGGGTTTGAAGCGTTACT
GCGCGAGAAAAAAGTACATTGTTATGGCTTGCCTTTTTATTCTAACTGGGGGCTAACAGTGGATCATCTTTCTCTAAACC
GAAGAAGTCGGAAGTTAAGTCTTTTAGAATTAATTGCTGGCGTGCTGATTTATTACCCACAATATATTGACCCAAAAACA
AAAACAATGATCGATGTGCAGCGAGCGGTTGATATTCTGATCGAGCAACGTCGAAAAATAAAAAATAATGAATTACATAC
AAATTATTTTATGAACATTTTTATGAAATTAAAAAATGTTTATTCTGTTTTGAGGTAG

Protein sequence :
MYQEFLIFSKGMLKIPYLSGFFTQRLKMFSPFVTWKKERTCILEWGYKASSKKARYFAQQHDLPYATIEDGFLRSIGLGV
DGYPPFSLVYDDIGIYYDINQPSRLENLILSQDVLLQEQVDQVKYAIELICTHNLSKYNHAIDTPLQNTKRPIVLVVDQT
YGDMAVTFGNAGQGDFLHMLERAIIENPTAEIWLKIHPDVMCGKKQGYLTEYQQFPRVKVLSEDFNSISLLKHVDKVYCV
TSHTGFEALLLGKTVVTFGAAWFSGWGLTDDRHAYIRQLKQSKRRAKRSFLQLFYSAYFQYCRYINPNTGKSGTLFDVID
YLIQAKKVTNQLAGDIYCVGMRFWKRKVVQPFFQFPRCRLHFVQNIHELKRCIRDKSQAKVVVWGHSHSEEVEYAKQQQL
PLLRMEDGFLRSIGLGSNLTPPISLVLDDVGIYFDAQSRSRLEDILQHQSFNLRDLQLAEMLKKTLIAQHISKYNVGHTH
LCLTHIRQNKLLVVGQVENDASIQYGSPHIRTNLDLLCTVRKNNLQAYIIYKPHPDVVAGNRKNTDRLDDYRQYADFVVE
KANILDCINQVDEVHTMTSLAGFEALLREKKVHCYGLPFYSNWGLTVDHLSLNRRSRKLSLLELIAGVLIYYPQYIDPKT
KTMIDVQRAVDILIEQRRKIKNNELHTNYFMNIFMKLKNVYSVLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 3e-174 54
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 3e-124 45
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 4e-124 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phyA YP_005363262.1 PhyA,Capsule polysaccharide export protein VFG0704 Protein 4e-152 54
phyA YP_005363262.1 PhyA,Capsule polysaccharide export protein VFG0692 Protein 4e-174 54
phyA YP_005363262.1 PhyA,Capsule polysaccharide export protein VFG0259 Protein 1e-174 54