Gene Information

Name : sitC (PMCN06_0417)
Accession : YP_005362843.1
Strain : Pasteurella multocida HN06
Genome accession: NC_017027
Putative virulence/resistance : Virulence
Product : manganese/iron transport system permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 440212 - 441081 bp
Length : 870 bp
Strand : -
Note : -

DNA sequence : 
ATGTGGGATTTATTGCTTGAACCTTTCCAATATAATTATATGGTAAAGGCAATTCTTCTTTCCGCAGCAGTAGGCGGAAT
TTGTGCTTTTATGTCTTCTTATTTAATGCTAAAAGGCTGGTCTTTAATTGGTGATGCCCTCTCTCACTCTGTCGTCCCCG
GTGTTGCCATTGCCTATGCCCTTTCCTTACCTTACGCACTTGGTGCCTTTTTTTCTGGTATTTTAGCCGCACTTTCGATT
TTGTGGATCAAATCAATTACTAAATTACGTGAAGATGCGGTAATTGGTTTTATCTTTACCACATTCTTTGCCTTAGGGTT
ATTGATTATCTCGCTTAACCCAACATCAGTTAATGTGCAAGATATCATCTTGGGCAACATTTTAGGCATTGCAGATGAAG
ACGTAACGCAAGTCGCCATCATTATTGTCATTACATTAAGTTTACTGCTGTTATTTTGGAAAGATCTCCTCTTAGTGTTT
TTTGATGAAACCCATGCGACTTCTGTTGGGCTTTCCCCCTTGCGCTATAAAGTACTGTTTTTCACTTTACTCAGTGCTTG
CGTCGTGGCTGCGTTACAAACTGTCGGTGCTATTTTAGTGATTGCTATGGTGATTACCCCTGGAGCAACCGCTTATTTGC
TAACCGACCGATTTGGAAAATTAGCGACGATTGCAGTAATATTAGGAACAACAACTAGCATCGTTGGGGTTTATCTAAGT
TATTATCTAGATGGAGCAACAGGCGGTTTAATCGTGTGTCTGCAAACTGCAATTTTCTTGCTCGCCTTTTGTTTTTCACC
GAAATATGGTGTCTTACGCCGGCAAAGTGCGGTACAAAATGGGAAAAATCAGGAGGCAAACCATGGCTGA

Protein sequence : 
MWDLLLEPFQYNYMVKAILLSAAVGGICAFMSSYLMLKGWSLIGDALSHSVVPGVAIAYALSLPYALGAFFSGILAALSI
LWIKSITKLREDAVIGFIFTTFFALGLLIISLNPTSVNVQDIILGNILGIADEDVTQVAIIIVITLSLLLLFWKDLLLVF
FDETHATSVGLSPLRYKVLFFTLLSACVVAALQTVGAILVIAMVITPGATAYLLTDRFGKLATIAVILGTTTSIVGVYLS
YYLDGATGGLIVCLQTAIFLLAFCFSPKYGVLRRQSAVQNGKNQEANHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-67 62
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-67 62
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-67 62
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-67 62
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-67 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005362843.1 manganese/iron transport system permease protein BAC0441 Protein 3e-79 71
sitC YP_005362843.1 manganese/iron transport system permease protein BAC0351 Protein 7e-68 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_005362843.1 manganese/iron transport system permease protein VFG0527 Protein 6e-68 62