Gene Information

Name : sitD (PMCN06_0416)
Accession : YP_005362842.1
Strain : Pasteurella multocida HN06
Genome accession: NC_017027
Putative virulence/resistance : Virulence
Product : manganese/iron transport system permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 439380 - 440219 bp
Length : 840 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTGATATCATCAATTGGTTTGTTGAACCTTTCTTGTATCCTTTTATGCAAAATGCCCTCTTCACCGCACTGATCGT
TGCGATTATATGTGCGGTGCTTTCCTGCTATTTAGTCTTAAAAGGTTGGTCATTAATGGGCGATGCAATTTCACATGCTG
TCTTGCCGGGAATTGTCATTGCATTTATGCTTGGTTTACCACTCACTTTTGGCGCATTTGGTGCAGGCTTATTTTGTGCA
TTAAGCGTCGGTTATCTGAAAGAAAATAGCCGTATTAAAGAAGATACCGTAATGGGGATTGTTTTTTCTGGGATGTTTGC
CTTTGGTATCGTTTTGTTTACCAAAGTCGAAACAGAACAGCACCTTACCCACATTTTATTTGGTAATCTGTTGGGTGTTA
GTCGTGCTGAGTTAGTGCAAACTTTTATTATTGCAACAATCATTTTTGTCATCATGATGCTTAAACGTCGTGACTTCTTG
CTTTATTGCTTTGATCAAAGTCATACCCGCGTCGCAGGGCTTTCACCTCGGCTATTACACTATGGCTTACTGGTCTTACT
TGCCTTAACCATTATCATGGCCATGCAAGTGGTCGGGGTGATTTTAGTGGTTGCTATGTTAATTTCACCGGGTATCACTG
CTTTTTTATTAAGTAAGCGTTTCGACATCATGCTCATCATTGCAATTTGTATGTCTGTCATCACCAGTGTTTTTGGGACG
ATTATTAGTTATCATATTGACGCAGCGACAGGACCTTGCATTATTTTATTACAAGCCATGTTCTTTACGCTCGCATTAGG
ATATCAAAAAGTAAAATGGCACATACAAAAGCCAATTTAA

Protein sequence : 
MADIINWFVEPFLYPFMQNALFTALIVAIICAVLSCYLVLKGWSLMGDAISHAVLPGIVIAFMLGLPLTFGAFGAGLFCA
LSVGYLKENSRIKEDTVMGIVFSGMFAFGIVLFTKVETEQHLTHILFGNLLGVSRAELVQTFIIATIIFVIMMLKRRDFL
LYCFDQSHTRVAGLSPRLLHYGLLVLLALTIIMAMQVVGVILVVAMLISPGITAFLLSKRFDIMLIIAICMSVITSVFGT
IISYHIDAATGPCIILLQAMFFTLALGYQKVKWHIQKPI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-58 52
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-58 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-58 52
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-58 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-58 52
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-46 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-46 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-46 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-46 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005362842.1 manganese/iron transport system permease protein BAC0442 Protein 1e-79 65
sitD YP_005362842.1 manganese/iron transport system permease protein BAC0352 Protein 9e-59 52
sitD YP_005362842.1 manganese/iron transport system permease protein BAC0441 Protein 4e-41 44
sitD YP_005362842.1 manganese/iron transport system permease protein BAC0351 Protein 1e-46 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005362842.1 manganese/iron transport system permease protein VFG0528 Protein 8e-59 52
sitD YP_005362842.1 manganese/iron transport system permease protein VFG0527 Protein 1e-46 41