|
Name : OCU_04720 (OCU_04720) Accession : YP_005336013.1 Strain : Mycobacterium intracellulare ATCC 13950 Genome accession: NC_016946 Putative virulence/resistance : Virulence Product : ATP-dependent protease ATP-binding subunit ClpC1 Function : - COG functional category : - COG ID : - EC number : - Position : 470933 - 473476 bp Length : 2544 bp Strand : + Note : - DNA sequence : ATGTTTGAAAGATTTACCGACCGTGCCCGCAGGGTCGTCGTCCTGGCGCAAGAAGAGGCCCGGATGCTCAACCACAACTA CATCGGCACCGAGCACATCCTGCTGGGTTTGATTCACGAGGGCGAAGGCGTCGCGGCGAAGTCGCTGGAGTCGCTGGGCA TCTCGCTCGAGGGCGTTCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCGCCGTCGGGCCACATCCCGTTC ACCCCGCGCGCCAAGAAGGTTCTCGAGCTGAGCCTGCGCGAGGCGCTGCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTGCTGGGCCTGATCCGTGAGGGTGAGGGCGTGGCCGCGCAGGTGCTGGTGAAGCTGGGCGCGGAGCTGACCCGGG TGCGCCAGCAGGTCATCCAGCTGCTGAGCGGCTACCAGGGCAAGGAGGCCGCCGAGGCGGGCACCGGTGGCCGTGGTGGC GAGTCCGGCAGCCCCTCGACCTCGTTGGTGCTCGACCAGTTCGGCCGCAACCTGACGGCCGCCGCGATGGAAGGCAAGCT GGACCCGGTCATCGGCCGCGAGAAGGAAATCGAGCGGGTGATGCAGGTGCTGAGCCGGCGCACCAAGAACAACCCGGTGC TGATCGGCGAGCCCGGCGTCGGCAAGACGGCCGTCGTCGAGGGCCTGGCGCAGGCCATCGTGCACGGCGAGGTCCCGGAG ACGCTGAAGGACAAGCAGCTCTACACGCTGGACCTGGGCTCGCTGGTCGCGGGCTCGCGCTACCGCGGTGACTTCGAGGA ACGCCTGAAGAAGGTGCTCAAGGAGATCAACACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACCCTGGTGG GTGCGGGCGCCGCCGAGGGCGCGATCGACGCCGCGTCGATCCTCAAGCCCAAGCTGGCCCGCGGCGAGCTGCAGACGATC GGCGCCACCACGCTCGACGAGTACCGAAAGTACATCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCGGTGCAGGT CGGGGAGCCGACGGTGGAGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGCTACGAGGCGCACCACCGGGTCTCGA TCACCGACCCGGCGCTGGTCGCGGCGGCCACCCTGGCCGACCGCTACATCAACGACCGGTTCCTGCCGGACAAGGCGATC GACCTGATCGACGAGGCGGGCGCCCGGATGCGGATCCGCCGGATGACCGCGCCGCCAGACCTGCGCGAGTTCGACGAGAA GATCGCCGACGCGCGCCGGGAGAAGGAATCGGCGATCGACGCCCAGGACTTCGAGAAGGCGGCCAGCCTGCGGGATCGGG AGAAGCAGCTGGTGGCCCAGCGCGCCGAGCGCGAAAAGCAGTGGCGCTCCGGCGATCTCGACGTTGTCGCCGAGGTCGAC GACGAGCAGATCGCCGAGGTGCTGGGCAACTGGACCGGCATCCCGGTGTTCAAGCTCACCGAGGCCGAGACCACCCGGTT GCTGCGCATGGAGGACGAGCTGCACAAGCGGATCATCGGCCAGGAGGACGCCGTCAAGGCCGTCTCCAAGGCGATCCGCC GCACCCGCGCCGGGCTGAAAGACCCCAAGCGCCCGTCGGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACC GAGCTGTCCAAGGCGCTGGCGAACTTCCTGTTCGGCGACGACGACGCGCTCATCCAGATCGACATGGGCGAGTTCCACGA CCGGTTCACCGCGTCGCGGTTGTTCGGCGCCCCGCCGGGATACGTCGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGG TGCGCCGCAAGCCGTTCTCCGTGGTGCTGTTCGACGAGATCGAGAAGGCGCACCAGGAGATCTACAACAGCCTGCTGCAG GTCCTCGAGGACGGTCGGCTCACCGACGGTCAGGGGCGCACGGTGGACTTCAAGAACACCGTGCTGATCTTCACCTCGAA CCTCGGCACGTCCGACATCTCCAAGCCGGTCGGCCTGGGCTTCACCCAGGGTGGCGGTGAGAACAACTACGAGCGGATGA AGCAGAAGGTCAACGACGAGCTGAAGAAGCACTTCCGCCCGGAGTTCCTCAACCGCATCGACGACATCATCGTCTTCCAC CAGCTGACCCGCGAAGAGATCATCCGGATGGTCGATCTGATGATCCAGCGCGTCGGCAACCAGCTCAAGAGCAAGGACAT GGCGATGGAGCTGACCGACAAGGCCAAGGCATTGCTGGCCAAGCGCGGCTTCGACCCCGTGCTGGGTGCCCGTCCGCTGC GGCGCACCATCCAGCGCGAGATCGAGGACCAGCTCTCGGAGAAGATCCTCTTCGAGGAGGTCGGTCCCGGCCAGGTTGTC ACGGTCGACGTCGACAACTGGGACGGCGAGAGCGCCGGCGAGGACGCGAAGTTCACCTTCACCGGCACCCGCAAGCCGCC GGCCGAGCCGGACCTGGCAAAGGCCGGAGCGCACGCCGCGCCGCAGGCGCCGGACGCGCAGTAG Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGG ESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPE TLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTI GATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPALVAAATLADRYINDRFLPDKAI DLIDEAGARMRIRRMTAPPDLREFDEKIADARREKESAIDAQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVD DEQIAEVLGNWTGIPVFKLTEAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQ VLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFTQGGGENNYERMKQKVNDELKKHFRPEFLNRIDDIIVFH QLTREEIIRMVDLMIQRVGNQLKSKDMAMELTDKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQVV TVDVDNWDGESAGEDAKFTFTGTRKPPAEPDLAKAGAHAAPQAPDAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 81 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| OCU_04720 | YP_005336013.1 | ATP-dependent protease ATP-binding subunit ClpC1 | VFG0079 | Protein | 0.0 | 60 |
| OCU_04720 | YP_005336013.1 | ATP-dependent protease ATP-binding subunit ClpC1 | VFG0080 | Protein | 2e-148 | 51 |
