Gene Information

Name : SAMSHR1132_22500 (SAMSHR1132_22500)
Accession : YP_005326746.1
Strain : Staphylococcus aureus MSHR1132
Genome accession: NC_016941
Putative virulence/resistance : Virulence
Product : gamma-hemolysin component C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2430060 - 2431037 bp
Length : 978 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAATGAATAAATTAGTTAAATCATCCGTCATTACATCAATGGCATTGCTTTTACTTTCTAATTCTGCTGATGCTGT
CGAAAAAATCACACCAGTTAGCGAAAAGAAAGTGGACAGCAGAGTTACTTTATACAAAACAACAGCTACATCTGACTCTG
ATAAATACCGTATTTCTCAAATTTTAACTTTCAATTTTATCAAAGATAAAAATTATGATAAAGATACTTTGGTACTAAAA
GCTGCTGGTAATATTAACTCTGGTTATACACCTCCAAATCCTAAAGACTATGATTTTTCAAAATTATATTGGGGCGCAAA
ATACAATGTATCTATTAGTTCAGAGTCTAATGATTCAGTAAATGTAGTTGATTATGCACCTAAAAATCAAAATGAAGAAT
TCCAAGTTCAAAATACTTTAGGATATACATTTGGTGGTGACATTAGTATCTCAAATGGTATATCTGGCGGTCTGAATGGT
AATACAGCATTTTCTGAAACAATTACTTATAAACAAGAAAGCTATAGAACAACATTAAGTAGAAATACAAATTATAAAAA
TGTTGGTTGGGGTGTTGAAGCACATAAAATTATGAATAACGGATGGGGTCCTTATGGACGTGATAGTTTTGACCCAACTT
ATGGCAATGAAATTTTCTTAAGTGGTAGACAAAGTAGTTCAAATGCTGGTCAAAATTTCATAGCACAACACCAAATGCCT
TTATTATCAAGAAGTAACTTTAACCCAGAGTTTTTAAGTGTATTGTCACACAAACAAAATGGCGCTAAAAAATCTAAAAT
CAAAGTAACTTACCAACGCGAAATGGATTTATACCAAATTCGCTGGAACGGTTTCTTCTGGTCAGGCGCAAATTATAAAA
ACTTTAAAACTAGAACTTTCACATCAATATATGAAGTTGATTGGGAAAATCACACAGTAAAATTATTAGACAAAAAAGAA
ACTGAAGTTAATAAATAA

Protein sequence : 
MKMNKLVKSSVITSMALLLLSNSADAVEKITPVSEKKVDSRVTLYKTTATSDSDKYRISQILTFNFIKDKNYDKDTLVLK
AAGNINSGYTPPNPKDYDFSKLYWGAKYNVSISSESNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGISGGLNG
NTAFSETITYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFDPTYGNEIFLSGRQSSSNAGQNFIAQHQMP
LLSRSNFNPEFLSVLSHKQNGAKKSKIKVTYQREMDLYQIRWNGFFWSGANYKNFKTRTFTSIYEVDWENHTVKLLDKKE
TEVNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lukD NP_374926.1 leukotoxin, LukD Virulence vSa¥â Protein 6e-105 78
lukD YP_186707.1 leukotoxin LukD Virulence vSa¥â Protein 5e-105 78
lukD NP_646584.1 leukotoxin Virulence vSa¥â Protein 5e-105 78
lukD YP_001332752.1 leukocidin LukD precursor Virulence vSa¥â Protein 5e-105 78
lukD YP_494459.1 leukotoxin LukD Virulence vSa¥â Protein 5e-105 78
SAKOR_01767 YP_008491955.1 Leukocidin F subunit lukD Virulence vSa¥â Protein 6e-105 78
lukD NP_372343.2 leukotoxin F-subunit Virulence vSa¥â Protein 6e-105 78
lukF NP_646195.1 Panton-Valentine leukocidin chain F precursor Virulence ¥ÕSa2 Protein 2e-92 74
lukF-PV YP_494078.1 Panton-Valentine leukocidin, LukF-PV Virulence ¥ÕSa2 Protein 2e-92 74
SAOV_1908 YP_005737353.1 Panton-Valentine leukocidin LukF-PV chain precursor Virulence ¥ÕSa3 Protein 1e-92 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SAMSHR1132_22500 YP_005326746.1 gamma-hemolysin component C VFG1275 Protein 2e-119 89
SAMSHR1132_22500 YP_005326746.1 gamma-hemolysin component C VFG1276 Protein 7e-93 74