Gene Information

Name : SAMSHR1132_22490 (SAMSHR1132_22490)
Accession : YP_005326745.1
Strain : Staphylococcus aureus MSHR1132
Genome accession: NC_016941
Putative virulence/resistance : Virulence
Product : gamma-hemolysin component C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2429114 - 2430052 bp
Length : 939 bp
Strand : +
Note : -

DNA sequence : 
ATGATTAAAAATAAAATATTAGCTACAACTTTATCCGCAAGTTTAATTGTCCCTCTTGCCACACCGATTTTTGAAAATGC
AAAAGCCGCAAACGATACCGAAGACATCGGTAAAGGTGACGTTGAAATAATTAAAAGAACTGAAGATAAAACAAGTAATA
AATGGGGTGTTACACAAAATATCCAATTTGATTTTGTTAAAGATAAGAAATATAACAAAGATGCCCTAATCCTTAAAATG
CAAGGATTCATTAGTTCAAGGACAGCATATTATAACTATAAAGATACCAATCATATCAAATCAATGCGCTGGCCTTTTCA
ATATAATATCGGTTTGAAAACAAACGATCCTAATGTTTCATTGATAAACTATCTTCCTAAAAACAAAGTTGAAACTACTA
ACGTAAGTCAAACATTAGGCTATAATATTGGCGGTAATTTCAAAACTGCCCCTTCTATTGGTGGTAGTGGTTCATTCAAT
TACTCAAAATCAATTAGTTATACACAACAAAATTATGTAAGTGAAGTAGAACATCAAAACTCTAAGAGTATTTTATGGGG
TGTTAAAGCTAATTCATTTGCCACACCAACAGGCCAAAAATCAGCTTTTGATAAAGATTTGTTTGTAGGATATAAACCAC
ACAGTCCAAATCCTAGAGACTATTTCCTTCCAGATAACGATTTACCACCATTAGTACAAAGTGGTTTTAATCCGTCATTT
ATCGCAACAGTATCTCACGAAAAAGGTTCAGGTGATACGAGTGAGTTTGAAATCACATACGGTAGAAATATGGATGTAAC
ACATGCAATTAAGAGAGCAACACACTATAGCAACAGTTATTTAGATGGTCATAGAATTCATAATGCATTTTTAAATAGAA
ATTATACTGTGAAATACGAGGTTAACTGGAAGACTCACGAAATAAAAGTGAAAGGATAG

Protein sequence : 
MIKNKILATTLSASLIVPLATPIFENAKAANDTEDIGKGDVEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKM
QGFISSRTAYYNYKDTNHIKSMRWPFQYNIGLKTNDPNVSLINYLPKNKVETTNVSQTLGYNIGGNFKTAPSIGGSGSFN
YSKSISYTQQNYVSEVEHQNSKSILWGVKANSFATPTGQKSAFDKDLFVGYKPHSPNPRDYFLPDNDLPPLVQSGFNPSF
IATVSHEKGSGDTSEFEITYGRNMDVTHAIKRATHYSNSYLDGHRIHNAFLNRNYTVKYEVNWKTHEIKVKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lukS NP_646196.1 Panton-Valentine leukocidin chain S precursor Virulence ¥ÕSa2 Protein 1e-119 78
lukS-PV YP_494079.1 Panton-Valentine leukocidin, LukS-PV Virulence ¥ÕSa2 Protein 1e-119 78
lukE YP_001332753.1 leukocidin LukE precursor Virulence vSa¥â Protein 9e-97 68
lukE YP_494460.1 leukotoxin LukE Virulence vSa¥â Protein 9e-97 68
lukE YP_186708.1 leukotoxin LukE Virulence vSa¥â Protein 9e-97 68
lukE NP_646585.1 leukotoxin LukE Virulence vSa¥â Protein 9e-97 68
lukE NP_372344.1 leukotoxin S-subunit Virulence vSa¥â Protein 9e-97 68
lukE NP_374927.1 leukotoxin LukE Virulence vSa¥â Protein 9e-97 68
SAKOR_01768 YP_008491956.1 Leukocidin S subunit lukE Virulence vSa¥â Protein 9e-97 68
SAOV_1909 YP_005737354.1 leukocidin chain lukM precursor Virulence ¥ÕSa3 Protein 1e-94 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SAMSHR1132_22490 YP_005326745.1 gamma-hemolysin component C VFG1274 Protein 6e-127 89
SAMSHR1132_22490 YP_005326745.1 gamma-hemolysin component C VFG1277 Protein 5e-120 78
SAMSHR1132_22490 YP_005326745.1 gamma-hemolysin component C VFG1273 Protein 3e-96 68