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Name : pilB (SGRA_0682) Accession : YP_005321005.1 Strain : Saprospira grandis Lewin Genome accession: NC_016940 Putative virulence/resistance : Virulence Product : type II general secretion pathway (GSP) E protein Function : - COG functional category : - COG ID : - EC number : - Position : 687878 - 689314 bp Length : 1437 bp Strand : - Note : COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB DNA sequence : ATGATAGACTGGGAAGATCGCCTTCAACAAATTGACAGAAAATTGTTGCAACGCCTTAGCGATGAAGAAGCTTGGCGCTA TCAGCTGATCCTATTTAAGGAAGATGAAAAGGGCTTACATGCCGCTGTGGCCGAAGATCAATCTGACTTGACTGCTTTGG CCCTAGAATTAGAACTCTTATTGGGCCAAACGGTTCAGTTTTACCCCTTACCCAAGGCTGTTTTGCACCCCTTTCTGGGC CAACACTATCGCCGCGATAAAAGCCACCGAAAACAAGAGAAACTAAGCACTACAAAAGATAGCTTGCTTTCCCTACTCCT AGAAGCTGAAGAGCTTGGCAGTAGCGATATTCACTTTGAAGTCTATGAGAAAAAAGCACGGATCCGCCTGAGAATAGATG GCGAATTGATCGAACGATATAGCTTGGAAAAGAAAGATTACCCTAGCTTAATCAATAAAATTAAAATTAAGGCCCAACTC GATATTGCCGAAAAACGCCTGCCCCAAGATGGCCGAATCTTTCTAGAAGAAGGCGGGCAAAAACTAGATATTCGAGTTTC TGTTTTGCCCACACTTTATGGCGAAAAAGTAGTTATGCGATTGCTCCGCAACAATAGCAGCCAAATGAAGCTAGAGGAGC TCGGTTTTGATGCTCAAAGCCTCAGACGCTATCAAGAAGGCATGATGATGCCAGAAGGTTTGGTACTGATTAGTGGACCA ACAGGATCTGGAAAAACAACAACGCTTTATGCTAGTTTGCATCAACTCAATACTGTGGGCCGAAATATTATTACTATTGA AGATCCTATCGAATATACTTTGGAGGGAATCAATCAGGTGCAACTCAAAGAGGCTATTGGACTTGATTTCGCTAGTAGTA TTCGAAGTTTTATGCGCCAAGATCCCAATGTAATTATGGTGGGGGAAATTCGAGATCGGTCTACAGCCGAAATGGCGATT AGAGCATCTTTAACGGGGCACTTGGTTTTTTCTACCATTCATACCAACTCTGCTTGGGGAATTGTGGCCCGTTTGGTAGA TATGGGTGTACCCGCTTATTTGCTAGCCGATACCTTGAATACGGCAGTGGCTCAGCGCTTGGTTCGTTTACTCTGCCCCG CTTGTAAACAAGCAGAGGCATTTCGACCAGAGTTGTTGCCTTATAGCTATACCTTAAAACAAAAAATTAGTCAGCACTAT CTAGCAAAAGGTTGTGCAGCCTGTAACTACACGGGTTATAAAGGTCGAAAAGCTATTTATGAGGTTATCCGAATAGATGA AGATTTGGCCCAACACATTAAAAATAAATCATTTAACGTAAAAACATTACTTCAGGAAAGGGGAGTAGAAAGCTTGGCGG AAGCGGCTATAAAGCTTTTAGTGGCTGGAGAGAGCACAATAGGAGAGCTTTATCCTATTTTGGCTGCAAGTAGTTAG Protein sequence : MIDWEDRLQQIDRKLLQRLSDEEAWRYQLILFKEDEKGLHAAVAEDQSDLTALALELELLLGQTVQFYPLPKAVLHPFLG QHYRRDKSHRKQEKLSTTKDSLLSLLLEAEELGSSDIHFEVYEKKARIRLRIDGELIERYSLEKKDYPSLINKIKIKAQL DIAEKRLPQDGRIFLEEGGQKLDIRVSVLPTLYGEKVVMRLLRNNSSQMKLEELGFDAQSLRRYQEGMMMPEGLVLISGP TGSGKTTTLYASLHQLNTVGRNIITIEDPIEYTLEGINQVQLKEAIGLDFASSIRSFMRQDPNVIMVGEIRDRSTAEMAI RASLTGHLVFSTIHTNSAWGIVARLVDMGVPAYLLADTLNTAVAQRLVRLLCPACKQAEAFRPELLPYSYTLKQKISQHY LAKGCAACNYTGYKGRKAIYEVIRIDEDLAQHIKNKSFNVKTLLQERGVESLAEAAIKLLVAGESTIGELYPILAASS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-73 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-73 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_005321005.1 | type II general secretion pathway (GSP) E protein | VFG0182 | Protein | 8e-77 | 47 |
| pilB | YP_005321005.1 | type II general secretion pathway (GSP) E protein | VFG1876 | Protein | 6e-77 | 46 |
| pilB | YP_005321005.1 | type II general secretion pathway (GSP) E protein | VFG2048 | Protein | 3e-74 | 46 |
| pilB | YP_005321005.1 | type II general secretion pathway (GSP) E protein | VFG2426 | Protein | 1e-66 | 45 |
