Gene Information

Name : kdsB (SGRA_3784)
Accession : YP_005324084.1
Strain : Saprospira grandis Lewin
Genome accession: NC_016940
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.38
Position : 3896942 - 3897658 bp
Length : 717 bp
Strand : +
Note : COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase

DNA sequence :
ATGAAAATTTTAGCTGTAATTCCAGCCCGCTACGCCTCTTCCCGTTTTCCTGGCAAGCCTTTGGCCGATATTGATGGCCA
GCCCATGGTTTGGCGGGTCTATCAGCAGGCCCAAAAAGTAAATTGGACCAAATTAGTGGTCGCTACCGATGACGACCGCA
TTTTTAATGCGGTGACTTCCCGAGGTGGCCTGGCCATGATGACCCGCCCAGATCATCCTTCGGGCAGCGATAGAGTAGGA
GAGGTGCTGGCCAAATTGCAAGCGCAGGGAGAAGATTTTGATTTTGTGGTGAATATTCAGGGCGATGAACCCTTTATTCA
GCCCGAACAATTGGAGGAACTCAAAGGAGCGCTACAACCAGGCGGCATTAGCAGCCTGATGAAAAAAATTGAGCAAAAAA
CAATGCTCGAGGCGCCTCAGGTGGTTAAAGTGGTGGTCAATGCCCAACAGCAGGCCCTTTATTTTAGCCGTTTTCCCATT
CCCTTTTTTAGAGGAGAGGAAAACCCCTTGGCCAAACACAATTACTACAAACATATTGGCCTCTATGGCTATGATGCCCA
ATTATTGCCCAAGTTGTTGGCGCTCTCTCCCTCGGCCTTAGAACAGGCGGAGTCCCTTGAGCAGCTGCGCTGGCTAGAGG
CGGGCTACCCCATTTATATGGCCGAAACGCAGTACGAAAGCCATGGCATTGATTATCCCGAAGACCTCAAGCGATGA

Protein sequence :
MKILAVIPARYASSRFPGKPLADIDGQPMVWRVYQQAQKVNWTKLVVATDDDRIFNAVTSRGGLAMMTRPDHPSGSDRVG
EVLAKLQAQGEDFDFVVNIQGDEPFIQPEQLEELKGALQPGGISSLMKKIEQKTMLEAPQVVKVVVNAQQQALYFSRFPI
PFFRGEENPLAKHNYYKHIGLYGYDAQLLPKLLALSPSALEQAESLEQLRWLEAGYPIYMAETQYESHGIDYPEDLKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 3e-28 46
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 5e-28 46
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 2e-28 46