Gene Information

Name : PM3016_4508 (PM3016_4508)
Accession : YP_005314418.1
Strain : Paenibacillus mucilaginosus 3016
Genome accession: NC_016935
Putative virulence/resistance : Virulence
Product : protein ClpE
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5387116 - 5389254 bp
Length : 2139 bp
Strand : +
Note : -

DNA sequence :
ATGCGCTGTCAACATTGCCATACGCAAGAAGCCGCCGTATCCCTGCATCTTCAGGTCAACACCCAAGTGGAGAAGCTCCA
GCTGTGCAGAGACTGCTATGCCAAGCTCGGCAGCGGAATCCCCTTCCCTGCGGGGGCCGGGTCCTTCCCGCACATGCCAT
CCTTGGACGATCTGTTCAAAGGTCTTATGCAGCCTCCGAAGGGGCAGGAGCCGCACCAAGCCGTCCGGACCGCCGGCAAA
CGCGGCGGCATCCTCGACGGAATCGGCCGGAATCTGAACGACGCGGCCAAAGCCGGCCTGATCGACACCGTGATCGGACG
CGACGAAGAGATCGACCGCGTCATTGAGATCCTGAACCGCCGCACGAAGAACAACCCGGTGCTGATCGGCGAGCCGGGCG
TCGGGAAGACGGCCATTGCCGAAGGGCTGGCCCTGCGTATCACCGAAGGCAAGGTTCCTTCCAAGCTGCTCGGCAAGGAA
GTGTATTCCCTGGACGTAGCCTCCCTGACGGCGGGCACGGGGATTCGCGGCCAGTTCGAGGAGAAGCTGAAAGGGCTGAT
ATCCGAGCTGCAGCAGCGCCAGAACGTCATCCTGTTCATTGACGAAATTCACACGCTGGTCGGGGCGGGTTCCGCCGAAG
GCTCGATGGACGCCGGGAACATCCTGAAGCCGGCCCTGGCCCGCGGCGAGCTGCAGGTCGTCGGCGCCACGACGCTGAAG
GAGTACCGCCGCATCGAGAAGGATGCCGCACTGGAGCGCCGCTTCCAGCCGGTCACGGTCGACGAGCCGACAGTGGAGGA
GGCCGTGGAGATCCTGAAGGGACTGCGACCGAAGTATGAAGAATACCACCAGGTGACCTACTCGGATGAGGCGATCCGTG
CCTGCGTGCTCCTCTCCCACCGCTACATCCAGGACCGCTTCCTGCCGGACAAAGCGATCGACCTGCTCGACGAAGCGGGC
GCCAAGCTGAATCTGCAGGGCGCAGGCGGCGGGGAAGCTGCGATCCGCACCCGGCTCTCCGGCATCCAGGAAGAGAAGCG
CCAGGCGACGCTGGCCGAGGACTACGAGCGCGCCGCACGGCTGCGTGACGAAGAGGCGAACCTGCTTCAGCAGATGGACG
AGCAGCGGCCGCAGGCGGCATCGGAAGTCCGCGTCGAGCACATCCAGGCCATCGTGGAACGGAAGACCGGCATCCCGGTC
GGCAAGCTGCAGCAGGACGAAGCGGCCAAGCTGAAGGACCTCGCCCGGCATCTCGAAGCGAAGGTCATCGGGCAGCCGGA
GGCCGTGCGCCAGGTGGCCCGGGCCGTCCGCCGCAGCCGCGCGGGACTGGCGCCGAAGAACAAGCCGATCGCCTCCTTCC
TGTTCGTCGGCCCAACCGGCGTCGGCAAGACCGAGCTGTCGAAGTCGCTCGCCGAAGAGCTGTTCGGACGCGCGGATGCG
ATGATCCGTCTGGACATGAGCGAATACATGGAGAAGCACTCCGTATCCAAGCTCATCGGCTCGCCTCCGGGCTATGTCGG
CCATGAAGAAGCCGGGCAGCTGACCGAACGCGTACGCCGCAATCCGTACAGCATTATCCTGCTCGACGAGATCGAGAAGG
CGCACCCGGACGTGCAGCACATGTTCCTGCAGGTGCTCGAAGACGGGCGCCTGACCGACAGCCAGGGACGCACGGTCAGC
TTCAAGGATACGGTCATCATCATGACATCCAATGCCGGAGTGACCGACAGGAAGAAAATCACCGTAGGCTTCTCCGCCGA
AGAGAGCACGCAGACCGGCTCGCTGCCGGAATCGCTCGGCTCCTACTTCCGTCCGGAGTTCCTGAACCGCTTTGATGCGA
TCATTCCGTTCGCCTCCCTGCAGGAGACGGATCTCATCCGCATCGTCGACAAGATGCTCGCGGAAGTCACGAGCACGCTG
CAGGAGCAGAACATCACCCTTCACGTGACGGACGAAGCGAAGCGCAAGCTTGCCGAGCTCGGCTATCATCCGTCCTTCGG
GGCGCGTCCGCTCCGCCGGGTGATCCAGCAGCACATCGAAGACGGCATCACGGATCTCATCCTCGAGCAGGAGCAGGTGC
AAGAGATCCGGGTCGAGGTCCGGGAGAACGGGATCTCCGTTCAGGCACTGCCATCGTAA

Protein sequence :
MRCQHCHTQEAAVSLHLQVNTQVEKLQLCRDCYAKLGSGIPFPAGAGSFPHMPSLDDLFKGLMQPPKGQEPHQAVRTAGK
RGGILDGIGRNLNDAAKAGLIDTVIGRDEEIDRVIEILNRRTKNNPVLIGEPGVGKTAIAEGLALRITEGKVPSKLLGKE
VYSLDVASLTAGTGIRGQFEEKLKGLISELQQRQNVILFIDEIHTLVGAGSAEGSMDAGNILKPALARGELQVVGATTLK
EYRRIEKDAALERRFQPVTVDEPTVEEAVEILKGLRPKYEEYHQVTYSDEAIRACVLLSHRYIQDRFLPDKAIDLLDEAG
AKLNLQGAGGGEAAIRTRLSGIQEEKRQATLAEDYERAARLRDEEANLLQQMDEQRPQAASEVRVEHIQAIVERKTGIPV
GKLQQDEAAKLKDLARHLEAKVIGQPEAVRQVARAVRRSRAGLAPKNKPIASFLFVGPTGVGKTELSKSLAEELFGRADA
MIRLDMSEYMEKHSVSKLIGSPPGYVGHEEAGQLTERVRRNPYSIILLDEIEKAHPDVQHMFLQVLEDGRLTDSQGRTVS
FKDTVIIMTSNAGVTDRKKITVGFSAEESTQTGSLPESLGSYFRPEFLNRFDAIIPFASLQETDLIRIVDKMLAEVTSTL
QEQNITLHVTDEAKRKLAELGYHPSFGARPLRRVIQQHIEDGITDLILEQEQVQEIRVEVRENGISVQALPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 6e-149 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PM3016_4508 YP_005314418.1 protein ClpE VFG0080 Protein 0.0 61
PM3016_4508 YP_005314418.1 protein ClpE VFG0079 Protein 3e-154 55